Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   K6976_RS07000 Genome accession   NZ_CP082202
Coordinates   1425971..1426810 (-) Length   279 a.a.
NCBI ID   WP_205027222.1    Uniprot ID   -
Organism   Streptococcus suis strain SS389     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1420971..1431810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6976_RS06985 (K6976_06985) uidA 1421318..1423117 (-) 1800 WP_205027220.1 beta-glucuronidase -
  K6976_RS06990 (K6976_06990) - 1423133..1424161 (-) 1029 WP_205027221.1 sugar kinase -
  K6976_RS06995 (K6976_06995) - 1424231..1425784 (-) 1554 WP_024394643.1 MFS transporter -
  K6976_RS07000 (K6976_07000) endA 1425971..1426810 (-) 840 WP_205027222.1 DNA/RNA non-specific endonuclease Machinery gene
  K6976_RS07005 (K6976_07005) - 1426840..1427031 (-) 192 WP_012775177.1 DNA-directed RNA polymerase subunit beta -
  K6976_RS07010 (K6976_07010) murA 1427024..1428307 (-) 1284 WP_136628365.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  K6976_RS07015 (K6976_07015) - 1428331..1428555 (-) 225 WP_012775178.1 DUF1146 family protein -
  K6976_RS07020 (K6976_07020) - 1428615..1429031 (-) 417 WP_002936007.1 F0F1 ATP synthase subunit epsilon -
  K6976_RS07025 (K6976_07025) atpD 1429041..1430447 (-) 1407 WP_024407431.1 F0F1 ATP synthase subunit beta -
  K6976_RS07030 (K6976_07030) - 1430467..1431345 (-) 879 WP_002936012.1 F0F1 ATP synthase subunit gamma -

Sequence

Protein


Download         Length: 279 a.a.        Molecular weight: 30194.42 Da        Isoelectric Point: 5.9510

>NTDB_id=599882 K6976_RS07000 WP_205027222.1 1425971..1426810(-) (endA) [Streptococcus suis strain SS389]
MAKKNVKKQAMSLLSLLATIVVVAGGYLLSDNKSSNVAEYSYYVNQSKASEGTPSQELASSVLTEDVKKQLGNSIEWNGA
GAFIINGNQTDLDASVASVPYGDNKTKTVQGEMVPTVANALLAKSTRQYKDREETGNGRTSWTPAGWHQVHDLTGEYDHA
VDRGHLLGYALIGGLSGFDASTSNPKNIAVQTAWSNQANDQTSTGQNYFESQIRRALDKNKRVRYRVTLVYAESEDLVPV
GSHLEAKAADGSLEFNVFVPNVQSGLSINYHSGEITVNE

Nucleotide


Download         Length: 840 bp        

>NTDB_id=599882 K6976_RS07000 WP_205027222.1 1425971..1426810(-) (endA) [Streptococcus suis strain SS389]
ATGGCGAAGAAAAATGTAAAAAAACAAGCAATGAGTCTGCTCAGCTTATTGGCTACGATTGTTGTAGTAGCGGGGGGCTA
TCTTTTAAGTGATAACAAGAGCAGTAACGTTGCTGAATATTCCTATTATGTCAATCAGTCTAAGGCAAGTGAAGGCACAC
CTAGTCAGGAACTGGCTAGTTCGGTATTGACAGAAGATGTAAAAAAGCAACTGGGGAATTCGATTGAATGGAATGGTGCT
GGAGCATTTATTATTAACGGGAATCAAACGGATTTAGATGCATCGGTTGCCAGTGTTCCTTATGGTGATAATAAGACAAA
AACAGTCCAGGGAGAAATGGTTCCAACAGTAGCCAATGCGCTTTTAGCCAAATCTACACGTCAGTATAAGGACCGTGAAG
AAACAGGAAATGGTCGGACTTCTTGGACACCTGCGGGTTGGCACCAGGTCCATGATTTAACTGGAGAATATGACCATGCA
GTGGACCGTGGTCACCTCCTAGGTTATGCTTTGATTGGTGGATTGTCTGGTTTCGATGCTTCAACCAGCAATCCTAAGAA
TATTGCAGTTCAAACAGCTTGGTCCAACCAAGCTAACGACCAAACTTCAACTGGGCAGAATTATTTTGAAAGTCAGATTC
GGCGGGCCTTGGATAAAAATAAGCGTGTCCGCTATCGTGTGACCTTGGTGTATGCTGAGAGTGAAGACCTTGTTCCTGTC
GGAAGCCATCTAGAGGCAAAAGCAGCAGATGGTAGCCTAGAGTTCAATGTGTTCGTTCCAAATGTGCAGAGTGGTCTCAG
TATCAACTATCATAGTGGTGAAATCACGGTGAATGAATAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(81-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

70.339

84.588

0.595
  endA Streptococcus pneumoniae D39

70.339

84.588

0.595
  endA Streptococcus pneumoniae R6

70.339

84.588

0.595
  endA Streptococcus pneumoniae TIGR4

70.339

84.588

0.595