Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   NC847_RS02345 Genome accession   NZ_CP098474
Coordinates   451990..452655 (+) Length   221 a.a.
NCBI ID   WP_263055817.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10239     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 446990..457655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NC847_RS02320 (NC847_02305) cysT 447085..447921 (-) 837 WP_260236887.1 sulfate ABC transporter permease subunit CysT -
  NC847_RS02325 (NC847_02310) - 448102..448434 (+) 333 WP_003687908.1 hypothetical protein -
  NC847_RS02330 (NC847_02315) - 448793..449302 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  NC847_RS02335 (NC847_02320) - 449532..450113 (-) 582 WP_003701053.1 superoxide dismutase -
  NC847_RS02340 (NC847_02325) dnaB 450276..451682 (+) 1407 WP_241532347.1 replicative DNA helicase -
  NC847_RS02345 (NC847_02330) pilH 451990..452655 (+) 666 WP_263055817.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  NC847_RS02350 (NC847_02335) pilV/pilI 452684..453292 (+) 609 WP_263852580.1 type IV pilus modification protein PilV Regulator
  NC847_RS02355 (NC847_02340) pilJ 453289..454257 (+) 969 WP_260236889.1 PilW family protein Machinery gene
  NC847_RS02360 (NC847_02345) pilK 454236..454844 (+) 609 WP_215318018.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  NC847_RS02365 (NC847_02350) pilL 454846..455319 (+) 474 WP_263852591.1 PilX family type IV pilin Machinery gene
  NC847_RS02370 (NC847_02355) - 455931..456376 (-) 446 Protein_461 AzlC family ABC transporter permease -
  NC847_RS02375 (NC847_02360) dut 456542..456994 (+) 453 WP_260236890.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24532.77 Da        Isoelectric Point: 9.1685

>NTDB_id=599879 NC847_RS02345 WP_263055817.1 451990..452655(+) (pilH) [Neisseria gonorrhoeae strain 10239]
MCTRKQQGFTLTELLIVMAIAAIMATIALPNMSGWIASRRIASHAEQVANLLRFSRGEAVRLNLPVYICPAQVKKDGASN
NRCDFSKKGWGMLAFGDKNDNKAYDGDATDVFLRSVVLNDTDDSRINYAFNHIAFGSSQPTADRVVWTFNQNGTFGYSSD
QDLKNNSKFVYSDGYIQIVLTDARAVSDADRKFRSAVVLINSSGRVEVCRKNDTRAVCKHQ

Nucleotide


Download         Length: 666 bp        

>NTDB_id=599879 NC847_RS02345 WP_263055817.1 451990..452655(+) (pilH) [Neisseria gonorrhoeae strain 10239]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGCCATTGCAGCCATTATGGCGACGAT
AGCCCTCCCCAATATGAGTGGGTGGATTGCATCACGCCGCATTGCCAGTCACGCGGAGCAGGTTGCCAACCTTTTGCGTT
TTTCCAGGGGCGAAGCCGTTCGGCTCAATCTCCCTGTCTATATCTGTCCTGCCCAAGTTAAAAAAGACGGTGCGTCCAAC
AATAGATGTGACTTCAGCAAGAAGGGGTGGGGAATGTTGGCTTTCGGCGACAAAAACGACAATAAGGCATATGACGGCGA
TGCGACGGATGTTTTCCTCCGCAGCGTGGTGTTGAATGATACCGACGACAGCCGGATTAATTATGCCTTCAACCATATCG
CTTTCGGTTCGTCTCAGCCGACCGCCGACCGTGTAGTTTGGACGTTCAACCAAAACGGGACATTCGGCTATTCATCCGAT
CAGGATCTCAAGAATAATTCCAAATTTGTTTATTCTGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGTTTC
AGATGCCGATAGGAAATTCCGTTCGGCGGTGGTTTTGATTAACAGCAGCGGCAGGGTCGAAGTTTGTCGTAAAAACGATA
CGCGCGCCGTATGCAAACATCAATGA

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(44-204)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

94.545

99.548

0.941