Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF/cglF   Type   Machinery gene
Locus tag   K6976_RS00780 Genome accession   NZ_CP082202
Coordinates   124353..124787 (+) Length   144 a.a.
NCBI ID   WP_222759618.1    Uniprot ID   -
Organism   Streptococcus suis strain SS389     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 119353..129787
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6976_RS00745 (K6976_00745) - 120093..120467 (+) 375 WP_024385120.1 DUF1033 family protein -
  K6976_RS00750 (K6976_00750) - 120495..121445 (-) 951 WP_222759611.1 S66 peptidase family protein -
  K6976_RS00755 (K6976_00755) comYA 121531..122481 (+) 951 WP_222759613.1 competence type IV pilus ATPase ComGA Machinery gene
  K6976_RS00760 (K6976_00760) comYB 122393..123430 (+) 1038 WP_261988003.1 competence type IV pilus assembly protein ComGB Machinery gene
  K6976_RS00765 (K6976_00765) comYC 123432..123713 (+) 282 WP_222759615.1 competence type IV pilus major pilin ComGC Machinery gene
  K6976_RS00770 (K6976_00770) comGD 123694..124101 (+) 408 WP_222759617.1 competence type IV pilus minor pilin ComGD -
  K6976_RS00775 (K6976_00775) comYE 124073..124366 (+) 294 WP_172099849.1 competence type IV pilus minor pilin ComGE Machinery gene
  K6976_RS00780 (K6976_00780) comGF/cglF 124353..124787 (+) 435 WP_222759618.1 competence type IV pilus minor pilin ComGF Machinery gene
  K6976_RS00785 (K6976_00785) comGG 124765..125283 (+) 519 WP_222759619.1 competence type IV pilus minor pilin ComGG -
  K6976_RS00790 (K6976_00790) comYH 125337..126290 (+) 954 WP_222759621.1 class I SAM-dependent methyltransferase Machinery gene
  K6976_RS00795 (K6976_00795) - 126340..127527 (+) 1188 WP_222759623.1 acetate kinase -
  K6976_RS00800 (K6976_00800) - 127956..128507 (+) 552 WP_105127996.1 folate family ECF transporter S component -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16570.91 Da        Isoelectric Point: 8.0041

>NTDB_id=599865 K6976_RS00780 WP_222759618.1 124353..124787(+) (comGF/cglF) [Streptococcus suis strain SS389]
MLKSKIPAFTLLECLVALVILSGSLLVFEGLSKLLVQEAHYQRHTIQKEWQVFSSQLRSEWDQADLVKVENGKVYVNKGE
QALAFGKSRSDDFRKTNDRGQGYQPMLYQVDSAVISQENQLVRIDFSFKNGEERTFIYAFKEKS

Nucleotide


Download         Length: 435 bp        

>NTDB_id=599865 K6976_RS00780 WP_222759618.1 124353..124787(+) (comGF/cglF) [Streptococcus suis strain SS389]
TTGTTAAAAAGTAAAATTCCTGCCTTTACTCTCCTGGAATGCTTGGTAGCCTTAGTCATCCTTTCAGGTAGCCTTTTGGT
CTTTGAAGGCTTGTCAAAACTGCTGGTCCAAGAAGCGCATTACCAAAGGCATACCATACAGAAGGAATGGCAGGTCTTTT
CTAGCCAGTTGCGGTCGGAGTGGGACCAGGCGGACTTGGTCAAGGTTGAAAATGGCAAGGTCTATGTCAACAAAGGCGAA
CAGGCTTTGGCCTTTGGTAAGTCACGGTCGGATGATTTTAGGAAAACAAATGACAGGGGACAGGGCTACCAGCCCATGCT
CTATCAGGTGGATAGCGCAGTCATTTCCCAAGAAAACCAGCTGGTGCGCATCGACTTTAGCTTTAAAAACGGAGAGGAGC
GGACCTTTATTTATGCTTTTAAAGAAAAAAGTTAA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(38-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF/cglF Streptococcus pneumoniae Rx1

51.773

97.917

0.507
  comGF/cglF Streptococcus pneumoniae D39

51.773

97.917

0.507
  comGF/cglF Streptococcus pneumoniae R6

51.773

97.917

0.507
  comGF/cglF Streptococcus pneumoniae TIGR4

51.773

97.917

0.507
  comYF Streptococcus mutans UA140

49.306

100

0.493
  comGF/cglF Streptococcus mitis NCTC 12261

52.239

93.056

0.486
  comYF Streptococcus mutans UA159

48.611

100

0.486
  comGF Lactococcus lactis subsp. cremoris KW2

47.518

97.917

0.465
  comGF/cglF Streptococcus mitis SK321

49.254

93.056

0.458