Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | K6976_RS00790 | Genome accession | NZ_CP082202 |
| Coordinates | 125337..126290 (+) | Length | 317 a.a. |
| NCBI ID | WP_222759621.1 | Uniprot ID | - |
| Organism | Streptococcus suis strain SS389 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 120337..131290
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K6976_RS00750 (K6976_00750) | - | 120495..121445 (-) | 951 | WP_222759611.1 | S66 peptidase family protein | - |
| K6976_RS00755 (K6976_00755) | comYA | 121531..122481 (+) | 951 | WP_222759613.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| K6976_RS00760 (K6976_00760) | comYB | 122393..123430 (+) | 1038 | WP_261988003.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| K6976_RS00765 (K6976_00765) | comYC | 123432..123713 (+) | 282 | WP_222759615.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| K6976_RS00770 (K6976_00770) | comGD | 123694..124101 (+) | 408 | WP_222759617.1 | competence type IV pilus minor pilin ComGD | - |
| K6976_RS00775 (K6976_00775) | comYE | 124073..124366 (+) | 294 | WP_172099849.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| K6976_RS00780 (K6976_00780) | comGF/cglF | 124353..124787 (+) | 435 | WP_222759618.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| K6976_RS00785 (K6976_00785) | comGG | 124765..125283 (+) | 519 | WP_222759619.1 | competence type IV pilus minor pilin ComGG | - |
| K6976_RS00790 (K6976_00790) | comYH | 125337..126290 (+) | 954 | WP_222759621.1 | class I SAM-dependent methyltransferase | Machinery gene |
| K6976_RS00795 (K6976_00795) | - | 126340..127527 (+) | 1188 | WP_222759623.1 | acetate kinase | - |
| K6976_RS00800 (K6976_00800) | - | 127956..128507 (+) | 552 | WP_105127996.1 | folate family ECF transporter S component | - |
| K6976_RS00805 (K6976_00805) | - | 128563..129819 (+) | 1257 | WP_222759625.1 | folylpolyglutamate synthase/dihydrofolate synthase family protein | - |
| K6976_RS00810 (K6976_00810) | tnpA | 130011..130475 (+) | 465 | WP_029172398.1 | IS200/IS605-like element ISSsu4 family transposase | - |
Sequence
Protein
Download Length: 317 a.a. Molecular weight: 35701.79 Da Isoelectric Point: 4.5112
>NTDB_id=599866 K6976_RS00790 WP_222759621.1 125337..126290(+) (comYH) [Streptococcus suis strain SS389]
MNFEKIEQAYDLLLENVQTIQNQLGTNIYDAMIEQNAAYLAGQHDTDLIVRNNQTLHDLHLTKEEWRRAFQFLLIKANQT
EPMQYNHQFTPDSIGFILSFLVDQLVSTSKVTVLEIGSGTGNLAQTVLNASQKDLDYLGIEVDDLLIDLSASMADVMQAE
ISFAQGDAVRPQILKESQIILADLPIGYYPDDQIASRYQVASQTEHTYAHHLLMEQSLKYLEKDGFAILLAPNDLLTSPQ
SDLLKGWLQAEANVVAMIALPPSLFGKATMAKSIFVLQKKTARPLVPFVYPLQSLQEPEAIQKFMVNFKNWKQENAI
MNFEKIEQAYDLLLENVQTIQNQLGTNIYDAMIEQNAAYLAGQHDTDLIVRNNQTLHDLHLTKEEWRRAFQFLLIKANQT
EPMQYNHQFTPDSIGFILSFLVDQLVSTSKVTVLEIGSGTGNLAQTVLNASQKDLDYLGIEVDDLLIDLSASMADVMQAE
ISFAQGDAVRPQILKESQIILADLPIGYYPDDQIASRYQVASQTEHTYAHHLLMEQSLKYLEKDGFAILLAPNDLLTSPQ
SDLLKGWLQAEANVVAMIALPPSLFGKATMAKSIFVLQKKTARPLVPFVYPLQSLQEPEAIQKFMVNFKNWKQENAI
Nucleotide
Download Length: 954 bp
>NTDB_id=599866 K6976_RS00790 WP_222759621.1 125337..126290(+) (comYH) [Streptococcus suis strain SS389]
ATGAATTTTGAGAAGATTGAACAGGCTTACGACCTGCTATTAGAAAACGTACAGACCATCCAAAACCAGCTAGGCACCAA
TATCTATGATGCCATGATTGAGCAAAACGCAGCCTATCTAGCTGGTCAGCACGACACGGATTTGATTGTCCGCAACAACC
AAACCTTACACGACTTGCACTTGACCAAGGAAGAATGGCGTCGTGCCTTCCAATTCCTACTGATCAAGGCCAATCAGACA
GAGCCTATGCAGTACAATCACCAGTTTACACCGGATTCTATCGGCTTTATCCTGTCATTCCTGGTGGATCAACTAGTATC
TACTTCAAAAGTAACAGTCTTGGAGATTGGCTCGGGGACAGGGAACCTGGCTCAGACCGTTCTCAATGCCAGCCAGAAAG
ACTTGGACTATCTGGGGATTGAAGTGGATGACCTCTTGATTGATTTATCAGCTAGCATGGCAGATGTTATGCAGGCAGAG
ATTTCCTTTGCCCAGGGTGATGCGGTACGTCCGCAGATTTTGAAGGAAAGCCAAATCATTCTTGCGGATTTACCAATCGG
GTACTATCCAGATGACCAGATTGCCAGTCGCTATCAGGTGGCTAGCCAGACGGAGCATACCTACGCTCATCATTTGCTCA
TGGAACAGTCCCTCAAATATTTGGAAAAGGATGGCTTTGCTATTTTATTGGCTCCAAATGATCTTTTAACCAGTCCACAG
AGCGATTTGTTGAAAGGTTGGTTGCAAGCAGAGGCTAATGTCGTTGCCATGATTGCCCTGCCACCAAGTCTTTTTGGTAA
AGCAACCATGGCCAAGTCAATTTTTGTCTTGCAGAAGAAGACTGCTAGACCGCTAGTACCATTTGTCTATCCCTTGCAGA
GTTTGCAAGAACCTGAAGCTATTCAGAAGTTCATGGTCAATTTCAAAAATTGGAAGCAAGAGAATGCAATTTAG
ATGAATTTTGAGAAGATTGAACAGGCTTACGACCTGCTATTAGAAAACGTACAGACCATCCAAAACCAGCTAGGCACCAA
TATCTATGATGCCATGATTGAGCAAAACGCAGCCTATCTAGCTGGTCAGCACGACACGGATTTGATTGTCCGCAACAACC
AAACCTTACACGACTTGCACTTGACCAAGGAAGAATGGCGTCGTGCCTTCCAATTCCTACTGATCAAGGCCAATCAGACA
GAGCCTATGCAGTACAATCACCAGTTTACACCGGATTCTATCGGCTTTATCCTGTCATTCCTGGTGGATCAACTAGTATC
TACTTCAAAAGTAACAGTCTTGGAGATTGGCTCGGGGACAGGGAACCTGGCTCAGACCGTTCTCAATGCCAGCCAGAAAG
ACTTGGACTATCTGGGGATTGAAGTGGATGACCTCTTGATTGATTTATCAGCTAGCATGGCAGATGTTATGCAGGCAGAG
ATTTCCTTTGCCCAGGGTGATGCGGTACGTCCGCAGATTTTGAAGGAAAGCCAAATCATTCTTGCGGATTTACCAATCGG
GTACTATCCAGATGACCAGATTGCCAGTCGCTATCAGGTGGCTAGCCAGACGGAGCATACCTACGCTCATCATTTGCTCA
TGGAACAGTCCCTCAAATATTTGGAAAAGGATGGCTTTGCTATTTTATTGGCTCCAAATGATCTTTTAACCAGTCCACAG
AGCGATTTGTTGAAAGGTTGGTTGCAAGCAGAGGCTAATGTCGTTGCCATGATTGCCCTGCCACCAAGTCTTTTTGGTAA
AGCAACCATGGCCAAGTCAATTTTTGTCTTGCAGAAGAAGACTGCTAGACCGCTAGTACCATTTGTCTATCCCTTGCAGA
GTTTGCAAGAACCTGAAGCTATTCAGAAGTTCATGGTCAATTTCAAAAATTGGAAGCAAGAGAATGCAATTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA159 |
60.127 |
99.685 |
0.599 |
| comYH | Streptococcus mutans UA140 |
59.81 |
99.685 |
0.596 |