Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   NC846_RS10030 Genome accession   NZ_CP098458
Coordinates   1906531..1907718 (-) Length   395 a.a.
NCBI ID   WP_003700604.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10588     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 1901531..1912718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NC846_RS10005 (NC846_09915) - 1901655..1901849 (-) 195 WP_229930296.1 hypothetical protein -
  NC846_RS10010 (NC846_09920) - 1901863..1902681 (-) 819 WP_406947437.1 opacity family porin -
  NC846_RS10015 (NC846_09925) - 1902783..1903579 (-) 797 Protein_1937 IS1595 family transposase -
  NC846_RS10020 (NC846_09930) topA 1903666..1905972 (-) 2307 WP_003690297.1 type I DNA topoisomerase -
  NC846_RS10025 (NC846_09935) - 1906044..1906505 (-) 462 WP_003690120.1 DUF494 domain-containing protein -
  NC846_RS10030 (NC846_09940) dprA 1906531..1907718 (-) 1188 WP_003700604.1 DNA-processing protein DprA Machinery gene
  NC846_RS10035 (NC846_09945) - 1907809..1909086 (-) 1278 WP_003690124.1 sigma-54 dependent transcriptional regulator -
  NC846_RS10040 (NC846_09950) - 1909079..1911199 (-) 2121 WP_003694352.1 HAMP domain-containing histidine kinase -
  NC846_RS10045 (NC846_09955) - 1911199..1911798 (-) 600 WP_003690128.1 DUF4390 domain-containing protein -

Sequence


Protein


Download         Length: 395 a.a.        Molecular weight: 41879.00 Da        Isoelectric Point: 6.3096

>NTDB_id=599339 NC846_RS10030 WP_003700604.1 1906531..1907718(-) (dprA) [Neisseria gonorrhoeae strain 10588]
MTEDERFAWLQLAFTPYIGAESFLLLMRSFGSAQNALSAPAEQVAPAVRHKHALEAWRNAEKRALARQAAEAALEWEMRD
GCRLMLLQDEDFPEMLTQGLIAPPVLFLRGNVRLLHKPSAAIVGSRHATPQAMRIAKDFGRALGGKGIPTVSGMASGIDT
AAHQGALEAEGGTVAVWGTGIDRIYPPANKNLAYEIAEKGLIVSEFPIGTRPYAGNFPRRNRLIAALSQVTLVVEAALES
GSLITAGLAAEMGREVMAVPGSIDNPHSKGCHKLIKDGAKLTECLDDILNECPGLLQNTGASSYSINKDTPDTGRRAVQT
AYAPPPAAKMPSEGAAGGTAVGGILDKMGFDPIHPDVLAGQLAMPAADLYAALLELELDGSVAAMPGGRYQRIRT

Nucleotide


Download         Length: 1188 bp        

>NTDB_id=599339 NC846_RS10030 WP_003700604.1 1906531..1907718(-) (dprA) [Neisseria gonorrhoeae strain 10588]
ATGACAGAGGACGAACGTTTCGCGTGGCTGCAATTGGCGTTTACGCCCTATATCGGCGCGGAAAGTTTCCTGCTGCTGAT
GCGCAGTTTCGGCAGCGCGCAAAATGCCTTGTCCGCACCGGCGGAACAGGTTGCCCCGGCGGTGCGGCATAAGCACGCGC
TTGAGGCTTGGCGCAATGCGGAAAAACGCGCTTTGGCGCGGCAGGCGGCAGAAGCGGCGTTGGAATGGGAAATGCGGGAC
GGATGCCGCCTGATGCTGCTTCAGGATGAAGATTTCCCCGAAATGCTGACGCAGGGGCTGATCGCGCCGCCGGTTTTGTT
TTTGCGCGGCAACGTGCGGCTGCTGCACAAGCCTTCCGCCGCCATCGTCGGCAGCCGCCATGCCACGCCGCAGGCGATGC
GGATTGCCAAAGATTTCGGCAGGGCGTTGGGTGGGAAAGGCATTCCTACCGTGTCGGGTATGGCTTCGGGCATCGACACC
GCCGCCCATCAGGGCGCACTGGAGGCAGAAGGCGGCACCGTCGCCGTGTGGGGGACGGGCATAGACCGCATTTATCCGCC
GGCCAACAAAAACCTTGCCTATGAAATCGCCGAAAAAGGGCTGATTGTCAGCGAGTTCCCCATCGGCACGCGGCCGTATG
CCGGCAACTTTCCGCGCCGCAACCGCCTGATTGCCGCGCTGTCGCAGGTTACGCTGGTGGTCGAGGCCGCCTTGGAATCC
GGTTCGCTGATTACCGCCGGCCTGGCGGCAGAAATGGGGCGCGAAGTCATGGCGGTGCCCGGTTCGATAGACAACCCCCA
CAGCAAAGGCTGCCACAAACTGATTAAAGACGGAGCGAAACTGACGGAATGTTTGGACGACATCCTGAACGAATGCCCGG
GGCTATTGCAAAATACGGGTGCTTCGTCATATTCTATAAATAAGGATACGCCCGACACGGGCCGCCGCGCCGTTCAGACG
GCATACGCCCCGCCGCCTGCCGCAAAAATGCCGTCTGAAGGGGCGGCAGGCGGCACAGCCGTCGGCGGCATACTGGATAA
AATGGGTTTCGACCCCATCCATCCCGACGTGCTTGCCGGACAGTTGGCTATGCCTGCCGCAGATTTGTATGCCGCACTGT
TGGAATTGGAATTGGACGGCAGCGTTGCCGCCATGCCCGGCGGCAGATACCAGCGTATCCGAACTTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Neisseria gonorrhoeae strain FA1090

99.494

100

0.995

  dprA Neisseria gonorrhoeae MS11

99.241

100

0.992

  dprA Neisseria meningitidis strain C311

89.673

100

0.901

  dprA Neisseria meningitidis MC58

89.673

100

0.901

  dprA Vibrio cholerae O1 biovar El Tor strain E7946

37.531

100

0.377

  dprA Vibrio cholerae strain A1552

37.531

100

0.377