Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicR   Type   Regulator
Locus tag   K5J94_RS05240 Genome accession   NZ_CP081502
Coordinates   1073125..1073835 (+) Length   236 a.a.
NCBI ID   WP_159545788.1    Uniprot ID   -
Organism   Streptococcus halichoeri strain Shali_VAS-CPH     
Function   repress comCDE expression; repress comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1068125..1078835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5J94_RS05215 dhaL 1068271..1068846 (+) 576 WP_159545796.1 dihydroxyacetone kinase subunit DhaL -
  K5J94_RS05220 dhaM 1068846..1069220 (+) 375 WP_159550207.1 dihydroxyacetone kinase phosphoryl donor subunit DhaM -
  K5J94_RS05225 - 1069232..1069942 (+) 711 WP_159550204.1 MIP/aquaporin family protein -
  K5J94_RS05230 - 1070245..1071507 (-) 1263 WP_221912573.1 transposase -
  K5J94_RS05235 - 1071721..1072779 (+) 1059 WP_408022824.1 DUF3114 domain-containing protein -
  K5J94_RS05240 vicR 1073125..1073835 (+) 711 WP_159545788.1 response regulator YycF Regulator
  K5J94_RS05245 vicK 1073828..1075185 (+) 1358 Protein_987 cell wall metabolism sensor histidine kinase VicK -
  K5J94_RS05250 vicX 1075189..1075998 (+) 810 WP_159545784.1 MBL fold metallo-hydrolase Regulator
  K5J94_RS05255 rnc 1076102..1076815 (+) 714 WP_159564710.1 ribonuclease III -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27043.09 Da        Isoelectric Point: 5.0010

>NTDB_id=597065 K5J94_RS05240 WP_159545788.1 1073125..1073835(+) (vicR) [Streptococcus halichoeri strain Shali_VAS-CPH]
MKKVLIVDDEKPISDIIKFNLTKEGYETITAFDGREAVALYEAEKPDLVILDLMLPELDGLEVAKEIRKTSHIPIIMLSA
KDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTETIETAVAEENASLGNQEMTIGNLQIVPDAFVAKKRGVEVE
LTHREFELLYHLAKHMGQVMTREHLLETVWGYDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYFMKAYD

Nucleotide


Download         Length: 711 bp        

>NTDB_id=597065 K5J94_RS05240 WP_159545788.1 1073125..1073835(+) (vicR) [Streptococcus halichoeri strain Shali_VAS-CPH]
ATGAAAAAAGTTCTTATTGTCGATGACGAAAAGCCTATTTCAGACATCATTAAATTTAACCTAACAAAGGAAGGCTATGA
AACCATCACCGCTTTTGATGGGCGCGAAGCAGTAGCTTTGTATGAAGCCGAAAAACCTGATTTGGTCATCCTTGACTTGA
TGCTGCCAGAATTGGATGGTCTAGAGGTTGCCAAAGAAATCCGCAAAACAAGTCATATCCCCATTATTATGTTATCAGCA
AAAGATAGCGAATTTGACAAGGTCATTGGACTAGAGATAGGGGCTGATGATTATGTTACCAAGCCTTTTTCTAACCGGGA
ATTGCTTGCGCGCGTCAAAGCTCACCTCCGTCGTACGGAGACGATTGAAACAGCTGTCGCTGAAGAAAATGCATCACTTG
GCAATCAAGAGATGACCATTGGCAATTTGCAAATTGTGCCAGATGCCTTTGTCGCTAAAAAGCGTGGCGTGGAAGTTGAA
TTAACCCACCGTGAATTTGAATTGCTCTACCATTTAGCTAAACACATGGGCCAAGTGATGACGCGCGAACATTTGCTAGA
AACGGTATGGGGCTATGACTACTTTGGCGATGTGCGCACCGTGGATGTGACGGTACGTCGTCTGCGCGAAAAGATTGAAG
ACACACCGAGTCGCCCCGAATATATCTTAACCCGTCGCGGCGTCGGTTACTTTATGAAAGCATATGACTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-113)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(158-231)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicR Streptococcus mutans UA159

88.559

100

0.886
  micA Streptococcus pneumoniae Cp1015

78.541

98.729

0.775
  covR Lactococcus lactis subsp. lactis strain DGCC12653

44.635

98.729

0.441
  covR Streptococcus salivarius strain HSISS4

42.735

99.153

0.424
  scnR Streptococcus mutans UA159

36.481

98.729

0.36