Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   K5J94_RS05250 Genome accession   NZ_CP081502
Coordinates   1075189..1075998 (+) Length   269 a.a.
NCBI ID   WP_159545784.1    Uniprot ID   -
Organism   Streptococcus halichoeri strain Shali_VAS-CPH     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1070189..1080998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5J94_RS05230 - 1070245..1071507 (-) 1263 WP_221912573.1 transposase -
  K5J94_RS05235 - 1071721..1072779 (+) 1059 WP_408022824.1 DUF3114 domain-containing protein -
  K5J94_RS05240 vicR 1073125..1073835 (+) 711 WP_159545788.1 response regulator YycF Regulator
  K5J94_RS05245 vicK 1073828..1075185 (+) 1358 Protein_987 cell wall metabolism sensor histidine kinase VicK -
  K5J94_RS05250 vicX 1075189..1075998 (+) 810 WP_159545784.1 MBL fold metallo-hydrolase Regulator
  K5J94_RS05255 rnc 1076102..1076815 (+) 714 WP_159564710.1 ribonuclease III -
  K5J94_RS05260 smc 1076796..1080341 (+) 3546 WP_221912575.1 chromosome segregation protein SMC -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 30128.12 Da        Isoelectric Point: 5.5459

>NTDB_id=597066 K5J94_RS05250 WP_159545784.1 1075189..1075998(+) (vicX) [Streptococcus halichoeri strain Shali_VAS-CPH]
MTTNGFKYSILASGSTGNSFYLETPKQRLLIDAGLTGKKIVSLLAEIDRRPEDLDAILITHEHSDHIKGVGVLARKYQLD
VYANELTWQAIDQRNMLGKLDFAQKHIFQRDKVLTFGDIDIESFGVSHDAIDPQFYRFMKDNKSFVMLTDTGYVSDRLSG
LIENADGYLIESNHDVEILRAGSYPWPLKQRILSDHGHLSNEDGAGAMIRSMGYKTKKIYLGHLSKENNIKELAHMTMEN
QLAQADLAVGSDFTVLDTSPDTACPLTDI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=597066 K5J94_RS05250 WP_159545784.1 1075189..1075998(+) (vicX) [Streptococcus halichoeri strain Shali_VAS-CPH]
ATGACGACAAACGGCTTTAAGTATAGTATATTAGCTTCAGGCTCTACTGGAAATAGCTTTTATTTGGAGACGCCAAAGCA
GCGCCTTTTGATTGATGCCGGACTGACAGGGAAAAAAATCGTGAGCCTATTAGCTGAAATAGATCGACGCCCAGAAGATT
TAGATGCTATTTTAATCACACATGAGCATTCTGATCACATCAAAGGTGTTGGTGTTTTAGCCCGCAAGTATCAGCTTGAT
GTCTATGCCAATGAGCTAACTTGGCAGGCTATTGACCAACGCAATATGCTCGGAAAACTTGATTTTGCTCAAAAACATAT
TTTTCAACGTGATAAGGTGCTAACATTTGGCGATATTGACATTGAGAGTTTTGGTGTTAGTCATGACGCTATTGACCCAC
AGTTTTATCGTTTTATGAAAGATAATAAGTCTTTTGTTATGTTGACAGATACAGGTTATGTTAGTGATCGTTTGAGTGGC
TTAATCGAAAATGCTGACGGTTATCTCATCGAATCAAATCATGATGTTGAGATTTTGCGAGCAGGCTCTTATCCTTGGCC
GCTCAAACAGCGCATCTTATCAGACCATGGACATTTGTCAAATGAAGACGGTGCTGGTGCAATGATTCGTAGCATGGGCT
ACAAAACCAAGAAAATCTATCTTGGTCACCTGTCCAAAGAAAACAATATCAAAGAGTTGGCCCATATGACGATGGAAAAT
CAACTGGCTCAGGCTGATTTGGCAGTTGGCTCTGATTTTACAGTCTTAGACACATCACCAGATACGGCTTGTCCGTTAAC
AGATATTTAA

Domains

Predicted by InterproScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(28-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

75.465

100

0.755