Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   K5J94_RS04200 Genome accession   NZ_CP081502
Coordinates   870684..872660 (+) Length   658 a.a.
NCBI ID   WP_221913625.1    Uniprot ID   -
Organism   Streptococcus halichoeri strain Shali_VAS-CPH     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 865684..877660
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5J94_RS04185 - 866233..867381 (-) 1149 WP_408022840.1 D-alanyl-D-alanine carboxypeptidase family protein -
  K5J94_RS04190 - 867522..868760 (-) 1239 WP_221913620.1 serine hydrolase -
  K5J94_RS04195 pbp3 869117..870361 (-) 1245 WP_221913623.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  K5J94_RS04200 amiA3 870684..872660 (+) 1977 WP_221913625.1 peptide ABC transporter substrate-binding protein Regulator
  K5J94_RS04205 amiC 872728..874227 (+) 1500 WP_159542921.1 ABC transporter permease Regulator
  K5J94_RS04210 amiD 874227..875153 (+) 927 WP_159542918.1 oligopeptide ABC transporter permease OppC Regulator
  K5J94_RS04215 amiE 875162..876232 (+) 1071 WP_221913627.1 ABC transporter ATP-binding protein Regulator
  K5J94_RS04220 amiF 876225..877160 (+) 936 WP_221913628.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 658 a.a.        Molecular weight: 73435.33 Da        Isoelectric Point: 7.9154

>NTDB_id=597054 K5J94_RS04200 WP_221913625.1 870684..872660(+) (amiA3) [Streptococcus halichoeri strain Shali_VAS-CPH]
MKKGKWLAVAGVTVLSVSVLAACGNSNKTSKGSVYNYVYVQDPDTLDYTISGRASTSDITQQAIDGLLEYDRFGNLIPSL
AKKWTVSKDGLTYTYKLRDDAKWYTADGEEYAKVTANDFVTGVKHAADKNSDALYLIQDSIAGLDDYINGKTKDFSTVGV
KALDKHTVQYTLKQPENFWNSKLTYGVLAPVNADFLKSKGKDFGKASDVSSILYNGPYLISSLTSKSSIEFTKNENYWDK
KNVHIDNVQLTYYDGQDQESLFRNFDKGAYTAARLFPTTPSYKTAKKKYGESITYGPQKSNTFFVTFNLNRTAYGHTKKT
NDKQKDDTHKAILNKDFRQALTFGFNRKSYSAQSAGQEGADKSLRNMLVPPAFVQIKDQDFGKIVEKDLAAYGDQWKGIN
LAEAQDGLYNKDKAKAAMAKAKEALQAQGVQFPIHLDLPQEQTATVLLQQAQSMKQSIEDTLGKENVVIDIVELQSDTYN
NVTYMAETPAQQDWDLNTASGWSPDYTDPGSYLDIFNSKLPTAQTKFIGIQPLKDQAIVSEAGLDDFTQLVTEASKITND
QEVRYEKYAQAQAALIDSAVYIPTVSLGGTPRVTRIVPYSNAFGWAGVKSDDTYYKYMKIQDKPVTVKQQAKAAKEWEKA
KEKATKKYEESLEKHIEK

Nucleotide


Download         Length: 1977 bp        

>NTDB_id=597054 K5J94_RS04200 WP_221913625.1 870684..872660(+) (amiA3) [Streptococcus halichoeri strain Shali_VAS-CPH]
ATGAAAAAAGGTAAATGGTTAGCAGTAGCCGGTGTTACAGTCTTATCGGTATCCGTCTTGGCTGCTTGTGGTAATTCTAA
CAAAACAAGCAAAGGCAGTGTTTACAATTATGTCTACGTTCAAGACCCAGATACCTTAGACTATACGATTTCAGGCCGTG
CTTCGACCAGTGATATCACGCAACAGGCTATTGATGGTTTGCTCGAATATGATCGTTTTGGCAATCTCATCCCTTCTTTG
GCTAAAAAATGGACTGTTTCAAAAGACGGTTTGACCTATACTTACAAGCTCCGTGACGATGCCAAATGGTATACGGCTGA
TGGCGAAGAGTATGCCAAGGTCACAGCCAATGACTTTGTCACAGGGGTTAAACACGCTGCAGATAAGAACTCTGACGCTC
TTTATCTTATTCAAGACTCAATTGCTGGTCTAGATGATTATATCAATGGTAAAACCAAAGATTTCTCGACTGTAGGTGTT
AAGGCGCTAGATAAACATACCGTTCAATATACCTTAAAACAACCAGAAAACTTCTGGAATTCCAAATTGACCTATGGGGT
CTTGGCTCCGGTTAACGCTGATTTCTTAAAATCCAAAGGAAAAGACTTTGGTAAGGCTTCAGATGTTTCTTCGATTCTCT
ACAATGGTCCTTACCTTATCTCCTCACTGACCAGTAAGTCTTCTATTGAATTCACGAAAAATGAAAACTACTGGGATAAG
AAAAATGTGCACATTGATAATGTTCAGCTGACCTATTATGATGGGCAGGACCAAGAATCGCTCTTTAGAAACTTTGATAA
GGGTGCCTACACAGCTGCTCGGCTATTTCCGACAACGCCTTCTTACAAAACAGCTAAGAAAAAATACGGTGAGAGCATTA
CCTATGGACCGCAAAAGTCAAATACCTTTTTTGTAACCTTTAACTTGAATCGTACTGCTTATGGACATACCAAAAAGACT
AATGATAAGCAAAAAGATGATACCCATAAAGCTATCTTAAACAAAGACTTCCGACAAGCCTTGACCTTTGGCTTTAACCG
TAAATCCTATTCTGCCCAATCAGCTGGTCAAGAAGGTGCTGATAAATCCTTGAGAAATATGCTAGTACCACCAGCTTTTG
TGCAAATCAAGGATCAAGACTTCGGTAAAATCGTTGAAAAAGATTTAGCAGCCTATGGTGATCAATGGAAAGGTATCAAT
CTAGCTGAAGCTCAAGATGGCCTCTACAACAAAGACAAGGCTAAGGCAGCAATGGCTAAGGCTAAGGAAGCCCTTCAAGC
ACAGGGCGTTCAGTTCCCAATTCACCTTGATTTGCCGCAAGAACAAACAGCAACAGTGCTCTTACAGCAAGCTCAGTCAA
TGAAGCAATCTATTGAAGACACACTTGGTAAGGAAAATGTTGTTATTGATATTGTTGAGCTGCAAAGCGATACTTACAAT
AATGTTACTTATATGGCAGAAACCCCTGCCCAACAAGATTGGGACCTTAACACAGCATCTGGTTGGAGCCCTGACTACAC
TGATCCAGGTTCTTATCTTGACATCTTTAACTCAAAATTACCAACTGCCCAAACGAAATTCATCGGTATTCAACCTTTGA
AGGATCAAGCAATTGTTTCAGAGGCTGGCTTAGATGACTTTACTCAATTGGTCACTGAGGCAAGCAAGATTACTAATGAT
CAAGAAGTTCGCTATGAAAAATATGCTCAAGCCCAAGCAGCCCTTATTGATTCGGCAGTTTATATTCCAACTGTTTCATT
AGGTGGTACACCAAGGGTTACGAGAATTGTTCCTTATTCTAATGCTTTTGGTTGGGCAGGTGTTAAATCTGATGATACCT
ATTACAAATACATGAAGATTCAAGACAAGCCAGTAACAGTTAAACAACAGGCCAAGGCCGCAAAAGAATGGGAAAAGGCT
AAAGAAAAAGCAACTAAAAAATATGAAGAGTCATTAGAAAAGCATATTGAGAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMG 18311

52.504

100

0.526
  amiA3 Streptococcus thermophilus LMD-9

52.352

100

0.524
  amiA Streptococcus salivarius strain HSISS4

51.672

100

0.517