Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   K5J94_RS04220 Genome accession   NZ_CP081502
Coordinates   876225..877160 (+) Length   311 a.a.
NCBI ID   WP_221913628.1    Uniprot ID   -
Organism   Streptococcus halichoeri strain Shali_VAS-CPH     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 871225..882160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5J94_RS04205 amiC 872728..874227 (+) 1500 WP_159542921.1 ABC transporter permease Regulator
  K5J94_RS04210 amiD 874227..875153 (+) 927 WP_159542918.1 oligopeptide ABC transporter permease OppC Regulator
  K5J94_RS04215 amiE 875162..876232 (+) 1071 WP_221913627.1 ABC transporter ATP-binding protein Regulator
  K5J94_RS04220 amiF 876225..877160 (+) 936 WP_221913628.1 ATP-binding cassette domain-containing protein Regulator
  K5J94_RS04225 - 877625..878791 (+) 1167 WP_221913630.1 PTS sugar transporter subunit IIC -
  K5J94_RS04230 - 878784..879635 (+) 852 WP_159564117.1 alpha/beta hydrolase -
  K5J94_RS04235 - 879761..880600 (+) 840 WP_221913632.1 aldo/keto reductase -
  K5J94_RS04240 - 880921..882066 (+) 1146 WP_221913633.1 NADP-dependent malic enzyme -

Sequence

Protein


Download         Length: 311 a.a.        Molecular weight: 35066.45 Da        Isoelectric Point: 8.9707

>NTDB_id=597058 K5J94_RS04220 WP_221913628.1 876225..877160(+) (amiF) [Streptococcus halichoeri strain Shali_VAS-CPH]
MSEKLVEVKDLEISFGEGKKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNETSSGQILYDGKQINKSKSKS
EQVDLIKKIQMIFQDPAASLNERATVDYIISEGLYNHKLFKNKEDRKAKINHIMTEVGLLSEHLSRYPHEFSGGQRQRIG
IARALVMDPEFVIADEPISALDVSVRAQVLNLLKRMQKEKGLTYLFIAHDLSVVRFISDRIAVIHKGVIVEVAETEELFL
NPIHPYTKSLLSAVPIPDPILERQKKLVIYSADQHDYSVDKPQMVELKPGHFVWANQAEQEMYKKQLNLSS

Nucleotide


Download         Length: 936 bp        

>NTDB_id=597058 K5J94_RS04220 WP_221913628.1 876225..877160(+) (amiF) [Streptococcus halichoeri strain Shali_VAS-CPH]
ATGTCTGAGAAATTAGTCGAAGTTAAGGACTTGGAAATTTCCTTCGGTGAAGGAAAGAAAAAATTTGTAGCAGTGAAAAA
TGCCAATTTCTTCATCAATAAAGGTGAAACCTTTTCCTTGGTTGGTGAGTCAGGAAGTGGTAAAACAACGATTGGCCGGG
CGATCATTGGTTTAAATGAGACAAGTTCAGGGCAAATTCTCTATGATGGTAAACAAATTAACAAAAGCAAGAGTAAGTCA
GAACAGGTTGATCTAATCAAGAAAATCCAAATGATTTTTCAAGATCCAGCTGCTAGTCTAAATGAGCGAGCAACAGTAGA
TTATATTATCTCAGAAGGGCTTTATAATCATAAGCTGTTTAAAAACAAAGAAGATCGGAAAGCAAAAATTAATCATATCA
TGACAGAGGTCGGCTTGTTGTCTGAACATCTGTCTCGTTATCCGCATGAATTTTCCGGTGGACAGCGCCAGCGGATCGGC
ATCGCGCGTGCCTTAGTCATGGATCCAGAGTTTGTCATTGCAGACGAGCCGATTTCGGCCTTGGATGTTTCGGTGCGTGC
TCAGGTTTTAAACCTTTTGAAACGGATGCAAAAAGAAAAAGGACTGACCTATCTGTTCATTGCACATGATTTATCAGTCG
TACGCTTTATCTCGGATCGTATTGCGGTTATCCATAAGGGAGTGATTGTTGAGGTTGCAGAAACCGAAGAGCTCTTTCTC
AATCCCATCCATCCCTACACTAAATCACTCCTGTCAGCCGTTCCTATTCCTGATCCCATCTTAGAAAGACAAAAGAAACT
AGTCATATACTCGGCAGATCAGCATGATTATTCAGTTGATAAGCCACAGATGGTAGAATTAAAACCTGGCCACTTTGTCT
GGGCTAACCAAGCTGAACAGGAGATGTACAAAAAACAACTCAACCTTTCATCATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(25-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus salivarius strain HSISS4

81.046

98.392

0.797
  amiF Streptococcus thermophilus LMG 18311

80.719

98.392

0.794
  amiF Streptococcus thermophilus LMD-9

80.392

98.392

0.791