Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   K5J94_RS04215 Genome accession   NZ_CP081502
Coordinates   875162..876232 (+) Length   356 a.a.
NCBI ID   WP_221913627.1    Uniprot ID   -
Organism   Streptococcus halichoeri strain Shali_VAS-CPH     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 870162..881232
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5J94_RS04200 amiA3 870684..872660 (+) 1977 WP_221913625.1 peptide ABC transporter substrate-binding protein Regulator
  K5J94_RS04205 amiC 872728..874227 (+) 1500 WP_159542921.1 ABC transporter permease Regulator
  K5J94_RS04210 amiD 874227..875153 (+) 927 WP_159542918.1 oligopeptide ABC transporter permease OppC Regulator
  K5J94_RS04215 amiE 875162..876232 (+) 1071 WP_221913627.1 ABC transporter ATP-binding protein Regulator
  K5J94_RS04220 amiF 876225..877160 (+) 936 WP_221913628.1 ATP-binding cassette domain-containing protein Regulator
  K5J94_RS04225 - 877625..878791 (+) 1167 WP_221913630.1 PTS sugar transporter subunit IIC -
  K5J94_RS04230 - 878784..879635 (+) 852 WP_159564117.1 alpha/beta hydrolase -
  K5J94_RS04235 - 879761..880600 (+) 840 WP_221913632.1 aldo/keto reductase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 39815.68 Da        Isoelectric Point: 6.0526

>NTDB_id=597057 K5J94_RS04215 WP_221913627.1 875162..876232(+) (amiE) [Streptococcus halichoeri strain Shali_VAS-CPH]
MEAKKEVILSAKNIVVEFDVRDRVLTAIRDISLDLHEGEVLAVVGESGSGKSVLTKTFTGMLESNGRVASGSITYRGQEL
TKLKNHKDWEGIRGAKIATIFQDPMTSLDPIQTIGSQITEVIIKHQRQSKAQAYKMAIDYMTRVGIPEPEKRFYEYPFQY
SGGMRQRIVIAIALACRPDILICDEPTTALDVTIQAQIIDLLKTLQKEYGFTIIFITHDLGVVASIATTVAVMYAGDIVE
YGTVEDIFYDPRHPYTWSLLSSLPQLADDKGVLFSIPGTPPSLYTPIVGDAFAPRSRYAMTIDFEENVPRFDISNSHWAK
TWLLHPDAPKVEKPEVIQNIHEKISNKHVYRGEGNV

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=597057 K5J94_RS04215 WP_221913627.1 875162..876232(+) (amiE) [Streptococcus halichoeri strain Shali_VAS-CPH]
ATGGAAGCGAAAAAAGAAGTAATTTTAAGTGCAAAAAATATTGTTGTTGAATTTGATGTTCGTGATCGTGTGCTAACAGC
TATCCGTGATATTTCACTTGATTTACATGAAGGAGAAGTGCTAGCAGTGGTTGGTGAATCAGGTAGTGGAAAATCAGTGT
TGACAAAGACCTTTACCGGCATGCTAGAATCCAATGGTCGCGTTGCCTCAGGTAGCATCACCTATCGGGGCCAAGAATTA
ACAAAGTTAAAAAATCATAAAGATTGGGAAGGTATCCGCGGAGCAAAAATTGCGACGATCTTTCAAGATCCCATGACCAG
CTTGGACCCGATTCAGACTATTGGTAGTCAGATTACCGAAGTGATTATCAAACACCAAAGACAATCCAAGGCACAAGCCT
ACAAAATGGCCATTGATTATATGACTAGAGTCGGCATTCCTGAGCCTGAGAAACGCTTTTATGAATACCCTTTCCAGTAT
TCAGGTGGAATGCGGCAACGTATCGTTATTGCCATTGCCTTGGCTTGTCGACCAGATATTTTAATCTGTGATGAGCCCAC
AACGGCTTTGGATGTGACTATCCAGGCGCAAATTATTGACTTGCTTAAGACATTGCAAAAAGAGTATGGCTTTACCATTA
TCTTTATCACTCATGATTTGGGTGTGGTAGCCAGCATTGCGACAACTGTCGCCGTCATGTATGCTGGTGACATTGTAGAA
TACGGCACAGTCGAAGATATTTTCTACGACCCTAGACATCCTTATACCTGGAGTTTGTTGTCAAGTTTACCTCAGTTGGC
TGATGATAAAGGCGTTTTATTCTCAATCCCTGGCACCCCGCCTTCTTTGTATACTCCAATTGTTGGGGACGCCTTTGCAC
CGCGTTCTCGCTATGCTATGACAATTGACTTTGAAGAAAATGTGCCTCGTTTTGACATTTCAAACAGCCACTGGGCCAAG
ACTTGGTTGCTGCATCCGGATGCCCCTAAGGTTGAAAAGCCTGAGGTCATCCAAAATATTCACGAAAAAATTTCTAATAA
ACATGTTTATAGGGGGGAAGGAAATGTCTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(29-187)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-300)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

82.558

96.629

0.798
  amiE Streptococcus thermophilus LMG 18311

80.523

96.629

0.778
  amiE Streptococcus thermophilus LMD-9

80.523

96.629

0.778
  oppD Streptococcus mutans UA159

56.342

95.225

0.537