NTDB

Overview

Name	pilA	Type	Machinery gene
Locus tag	K5E88_RS01890	Genome accession	NZ_CP081486
Coordinates	365760..366194 (+)	Length	144 a.a.
NCBI ID	WP_005741096.1	Uniprot ID	-
Organism	Pasteurella multocida strain Pm3
Function	type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 360760..371194

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K5E88_RS01860 (K5E88_01860)	tadA	360871..361371 (-)	501	WP_016504277.1	tRNA adenosine(34) deaminase TadA	-
K5E88_RS01865 (K5E88_01865)	-	361386..362237 (-)	852	WP_005751072.1	thymidylate synthase	-
K5E88_RS01870 (K5E88_01870)	lgt	362243..363046 (-)	804	WP_005751073.1	prolipoprotein diacylglyceryl transferase	-
K5E88_RS01875 (K5E88_01875)	-	363056..363850 (-)	795	WP_014326303.1	sulfite exporter TauE/SafE family protein	-
K5E88_RS01880 (K5E88_01880)	rppH	363853..364449 (-)	597	WP_064775642.1	RNA pyrophosphohydrolase	-
K5E88_RS01885 (K5E88_01885)	ampD	365035..365601 (-)	567	WP_014326302.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
K5E88_RS01890 (K5E88_01890)	pilA	365760..366194 (+)	435	WP_005741096.1	prepilin peptidase-dependent pilin	Machinery gene
K5E88_RS01895 (K5E88_01895)	pilB	366194..367579 (+)	1386	WP_016504529.1	GspE/PulE family protein	Machinery gene
K5E88_RS01900 (K5E88_01900)	-	367579..368790 (+)	1212	WP_014326300.1	type II secretion system F family protein	-
K5E88_RS01905 (K5E88_01905)	-	368790..369512 (+)	723	WP_014326299.1	A24 family peptidase	-
K5E88_RS01910 (K5E88_01910)	coaE	369527..370147 (+)	621	WP_014326298.1	dephospho-CoA kinase	-
K5E88_RS01915 (K5E88_01915)	yacG	370158..370361 (+)	204	WP_005719879.1	DNA gyrase inhibitor YacG	-
K5E88_RS01920 (K5E88_01920)	-	370361..370630 (+)	270	WP_005722568.1	GNAT family N-acetyltransferase	-

Sequence

Protein

Download Length: 144 a.a. Molecular weight: 15058.48 Da Isoelectric Point: 9.1281

                                >NTDB_id=596806 K5E88_RS01890 WP_005741096.1 365760..366194(+) (pilA) [Pasteurella multocida strain Pm3]

MKKAIFFSIKKGFTLIELMIVIAIIAILATIAVPSYQNYTKKAAISELLQAAAPYRAEVELCIYNTNSTTNCNAGSHGIR

ADAAASKKYLKAITVKAGVITVTGQGSLEGISYTLTASGNAAQGVSWTVNCGAQSDIFPAGFCA

Nucleotide

Download Length: 435 bp

                                >NTDB_id=596806 K5E88_RS01890 WP_005741096.1 365760..366194(+) (pilA) [Pasteurella multocida strain Pm3]

ATGAAAAAAGCCATTTTCTTTTCGATTAAAAAAGGGTTTACGCTAATTGAATTAATGATTGTCATTGCCATTATTGCGAT

TTTAGCCACGATTGCCGTGCCATCTTATCAAAATTATACAAAAAAAGCGGCAATCTCTGAATTATTGCAAGCCGCAGCTC

CTTATCGTGCTGAGGTAGAGCTTTGTATCTATAATACAAATAGTACAACGAATTGTAATGCAGGAAGTCATGGTATTCGT

GCTGATGCTGCAGCAAGTAAAAAATATTTAAAAGCCATCACGGTTAAAGCTGGGGTAATTACTGTCACTGGACAAGGGAG

CTTGGAAGGAATTAGCTATACGCTGACAGCGAGTGGTAACGCAGCTCAAGGTGTTTCTTGGACAGTTAATTGTGGTGCTC

AATCTGACATTTTCCCAGCAGGATTTTGCGCATAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(42-141)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilA	Haemophilus influenzae 86-028NP	63.194	100	0.632
pilA	Haemophilus influenzae Rd KW20	61.111	100	0.611
pilA	Glaesserella parasuis strain SC1401	52.349	100	0.542
pilA	Vibrio cholerae O1 biovar El Tor strain E7946	36.806	100	0.368
pilA	Vibrio cholerae strain A1552	36.806	100	0.368
pilA	Vibrio cholerae C6706	36.806	100	0.368

Detailed information NTG0596806