Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   NAG75_RS03885 Genome accession   NZ_CP097873
Coordinates   634216..634668 (-) Length   150 a.a.
NCBI ID   WP_080607317.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain GL-601     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 629216..639668
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NAG75_RS03865 coaE 629733..630347 (-) 615 WP_005480887.1 dephospho-CoA kinase -
  NAG75_RS03870 pilD 630348..631217 (-) 870 WP_005493974.1 A24 family peptidase Machinery gene
  NAG75_RS03875 pilC 631282..632505 (-) 1224 WP_021822433.1 type II secretion system F family protein Machinery gene
  NAG75_RS03880 pilB 632529..634214 (-) 1686 WP_080607318.1 type IV-A pilus assembly ATPase PilB Machinery gene
  NAG75_RS03885 pilA 634216..634668 (-) 453 WP_080607317.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  NAG75_RS03890 nadC 634932..635819 (-) 888 WP_208893453.1 carboxylating nicotinate-nucleotide diphosphorylase -
  NAG75_RS03895 ampD 635912..636463 (+) 552 WP_025523108.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  NAG75_RS03900 pdhR 636869..637636 (+) 768 WP_005462576.1 pyruvate dehydrogenase complex transcriptional repressor PdhR -

Sequence

Protein


Download         Length: 150 a.a.        Molecular weight: 15677.98 Da        Isoelectric Point: 7.8461

>NTDB_id=596772 NAG75_RS03885 WP_080607317.1 634216..634668(-) (pilA) [Vibrio parahaemolyticus strain GL-601]
MKHSKQKKQQGFTLIELMIVVGIIGIISALAVPAYKSYVLKTEANTAVGVPRALLANVDLFVQEKGKYPNSTQAADLAAI
GAAIDMSAMGTLAITPDADGSEYGDIEFTIGSNASLSGKKVTFARSTNGWKCTHDTGQDLKGCATTPATP

Nucleotide


Download         Length: 453 bp        

>NTDB_id=596772 NAG75_RS03885 WP_080607317.1 634216..634668(-) (pilA) [Vibrio parahaemolyticus strain GL-601]
ATGAAACACAGTAAACAGAAAAAACAGCAAGGTTTTACCTTGATTGAATTGATGATTGTGGTTGGGATTATTGGGATTAT
AAGTGCATTAGCTGTACCAGCTTATAAAAGCTATGTACTAAAAACCGAAGCTAATACTGCTGTGGGCGTGCCAAGAGCCT
TGTTAGCAAACGTAGACCTCTTCGTCCAAGAAAAAGGTAAATACCCTAATTCTACTCAAGCTGCCGATCTTGCAGCTATC
GGAGCTGCTATAGATATGAGTGCGATGGGAACTCTTGCTATCACTCCTGACGCAGACGGTTCTGAGTACGGGGACATTGA
GTTTACCATTGGCTCTAATGCTTCATTGAGTGGCAAAAAGGTTACGTTTGCTCGCTCAACTAACGGTTGGAAGTGTACGC
ATGATACAGGTCAAGACCTTAAAGGCTGTGCTACCACTCCAGCAACTCCTTAA

Domains

Predicted by InterProScan.

Pilin (bacterial filament) (Pilin)

(56-139)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Vibrio parahaemolyticus RIMD 2210633

42.857

88.667

0.38
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

37.162

98.667

0.367
  pilA Vibrio cholerae strain A1552

37.162

98.667

0.367
  pilA Vibrio cholerae C6706

37.162

98.667

0.367
  pilA Pseudomonas aeruginosa PAK

37.162

98.667

0.367