Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | JMO09_RS10180 | Genome accession | NZ_CP080560 |
| Coordinates | 2059676..2060146 (-) | Length | 156 a.a. |
| NCBI ID | WP_000934768.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain HL17064 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2028218..2072719 | 2059676..2060146 | within | 0 |
Gene organization within MGE regions
Location: 2028218..2072719
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JMO09_RS09960 (JMO09_001992) | - | 2028218..2029663 (-) | 1446 | WP_069479479.1 | SH3 domain-containing protein | - |
| JMO09_RS09965 (JMO09_001993) | - | 2029644..2030081 (-) | 438 | WP_000354133.1 | phage holin | - |
| JMO09_RS09970 (JMO09_001994) | - | 2030137..2030532 (-) | 396 | WP_044435513.1 | hypothetical protein | - |
| JMO09_RS09975 (JMO09_001995) | - | 2030538..2031710 (-) | 1173 | WP_044435510.1 | BppU family phage baseplate upper protein | - |
| JMO09_RS09980 (JMO09_001996) | - | 2031723..2033492 (-) | 1770 | Protein_1976 | glucosaminidase domain-containing protein | - |
| JMO09_RS09985 (JMO09_001997) | - | 2033603..2034223 (-) | 621 | WP_000355823.1 | AP2 domain-containing protein | - |
| JMO09_RS15030 | - | 2034472..2034579 (-) | 108 | Protein_1978 | hypothetical protein | - |
| JMO09_RS09990 (JMO09_001998) | - | 2034716..2035015 (-) | 300 | WP_176430632.1 | DUF2951 domain-containing protein | - |
| JMO09_RS09995 (JMO09_001999) | - | 2035056..2035229 (-) | 174 | WP_001790193.1 | XkdX family protein | - |
| JMO09_RS10000 (JMO09_002000) | - | 2035204..2035611 (-) | 408 | WP_044425645.1 | DUF2977 domain-containing protein | - |
| JMO09_RS10005 (JMO09_002001) | - | 2035611..2037434 (-) | 1824 | WP_220374340.1 | phage baseplate upper protein | - |
| JMO09_RS10010 (JMO09_002002) | - | 2037434..2039332 (-) | 1899 | WP_031874266.1 | hypothetical protein | - |
| JMO09_RS10015 (JMO09_002003) | - | 2039345..2041231 (-) | 1887 | WP_001144709.1 | SGNH/GDSL hydrolase family protein | - |
| JMO09_RS10020 (JMO09_002004) | - | 2041242..2042177 (-) | 936 | WP_000560196.1 | phage tail domain-containing protein | - |
| JMO09_RS10025 (JMO09_002005) | - | 2042192..2045161 (-) | 2970 | WP_000414235.1 | terminase | - |
| JMO09_RS10030 (JMO09_002006) | - | 2045164..2045505 (-) | 342 | WP_001580347.1 | hypothetical protein | - |
| JMO09_RS10035 (JMO09_002007) | - | 2045526..2046020 (-) | 495 | WP_000141082.1 | tail assembly chaperone | - |
| JMO09_RS10040 (JMO09_002008) | - | 2046081..2046641 (-) | 561 | WP_000046067.1 | hypothetical protein | - |
| JMO09_RS10045 (JMO09_002009) | - | 2046628..2047065 (-) | 438 | WP_000270196.1 | DUF3168 domain-containing protein | - |
| JMO09_RS10050 (JMO09_002010) | - | 2047078..2047491 (-) | 414 | WP_001151335.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| JMO09_RS10055 (JMO09_002011) | - | 2047478..2047813 (-) | 336 | WP_000482986.1 | phage head closure protein | - |
| JMO09_RS10060 (JMO09_002012) | - | 2047806..2048120 (-) | 315 | WP_000338935.1 | phage head-tail connector protein | - |
| JMO09_RS10065 (JMO09_002013) | - | 2048120..2048446 (-) | 327 | WP_000278799.1 | Rho termination factor N-terminal domain-containing protein | - |
| JMO09_RS10070 (JMO09_002014) | - | 2048463..2049287 (-) | 825 | WP_001135558.1 | N4-gp56 family major capsid protein | - |
| JMO09_RS10075 (JMO09_002015) | - | 2049308..2049904 (-) | 597 | WP_000366932.1 | phage scaffolding protein | - |
| JMO09_RS10080 (JMO09_002016) | - | 2050002..2050982 (-) | 981 | WP_001795666.1 | phage head morphogenesis protein | - |
| JMO09_RS10085 (JMO09_002017) | - | 2050921..2052339 (-) | 1419 | WP_225305868.1 | phage portal protein | - |
| JMO09_RS10090 (JMO09_002018) | - | 2052353..2053561 (-) | 1209 | WP_001606760.1 | PBSX family phage terminase large subunit | - |
| JMO09_RS10095 (JMO09_002019) | - | 2053554..2054048 (-) | 495 | WP_000594082.1 | terminase small subunit | - |
| JMO09_RS10100 (JMO09_002020) | - | 2054376..2054798 (-) | 423 | WP_000162702.1 | RinA family phage transcriptional activator | - |
| JMO09_RS10105 (JMO09_002021) | - | 2054822..2054968 (-) | 147 | WP_000990005.1 | hypothetical protein | - |
| JMO09_RS10110 (JMO09_002022) | rinB | 2054969..2055142 (-) | 174 | WP_001606759.1 | transcriptional activator RinB | - |
| JMO09_RS10115 (JMO09_002023) | - | 2055135..2055371 (-) | 237 | WP_000483477.1 | hypothetical protein | - |
| JMO09_RS10120 (JMO09_002024) | - | 2055396..2055632 (-) | 237 | WP_053040393.1 | DUF1381 domain-containing protein | - |
| JMO09_RS10125 (JMO09_002025) | - | 2055649..2055822 (-) | 174 | WP_001209219.1 | hypothetical protein | - |
| JMO09_RS10130 (JMO09_002026) | - | 2055859..2056395 (-) | 537 | WP_031789556.1 | dUTPase | - |
| JMO09_RS10135 (JMO09_002027) | - | 2056388..2056636 (-) | 249 | WP_001065026.1 | DUF1024 family protein | - |
| JMO09_RS10140 (JMO09_002028) | - | 2056629..2056913 (-) | 285 | WP_001105618.1 | hypothetical protein | - |
| JMO09_RS10145 (JMO09_002029) | - | 2056910..2057311 (-) | 402 | WP_015978402.1 | hypothetical protein | - |
| JMO09_RS10150 (JMO09_002030) | - | 2057324..2057572 (-) | 249 | WP_015980409.1 | phi PVL orf 51-like protein | - |
| JMO09_RS10155 (JMO09_002031) | - | 2057573..2057932 (-) | 360 | WP_000117792.1 | SA1788 family PVL leukocidin-associated protein | - |
| JMO09_RS10160 (JMO09_002032) | - | 2057933..2058118 (-) | 186 | WP_001187264.1 | DUF3113 family protein | - |
| JMO09_RS10165 (JMO09_002033) | - | 2058118..2058525 (-) | 408 | WP_001599298.1 | RusA family crossover junction endodeoxyribonuclease | - |
| JMO09_RS10170 (JMO09_002034) | - | 2058534..2058752 (-) | 219 | WP_000338528.1 | hypothetical protein | - |
| JMO09_RS10175 (JMO09_002035) | - | 2058759..2059646 (-) | 888 | WP_220374341.1 | DnaD domain protein | - |
| JMO09_RS10180 (JMO09_002036) | ssbA | 2059676..2060146 (-) | 471 | WP_000934768.1 | single-stranded DNA-binding protein | Machinery gene |
| JMO09_RS10185 (JMO09_002037) | - | 2060147..2060764 (-) | 618 | WP_071890040.1 | MBL fold metallo-hydrolase | - |
| JMO09_RS10190 (JMO09_002038) | - | 2060845..2061765 (-) | 921 | WP_000138475.1 | recombinase RecT | - |
| JMO09_RS10195 (JMO09_002039) | - | 2061767..2063710 (-) | 1944 | WP_000700555.1 | AAA family ATPase | - |
| JMO09_RS10200 (JMO09_002040) | - | 2063719..2063982 (-) | 264 | WP_001205732.1 | hypothetical protein | - |
| JMO09_RS10205 (JMO09_002041) | - | 2063991..2064251 (-) | 261 | WP_000291075.1 | DUF1108 family protein | - |
| JMO09_RS10210 (JMO09_002042) | - | 2064344..2064505 (-) | 162 | WP_001285964.1 | DUF1270 domain-containing protein | - |
| JMO09_RS10215 (JMO09_002043) | - | 2064518..2064727 (-) | 210 | WP_031921283.1 | hypothetical protein | - |
| JMO09_RS10220 (JMO09_002044) | - | 2064740..2065453 (-) | 714 | WP_220374342.1 | BRO family protein | - |
| JMO09_RS10225 (JMO09_002045) | - | 2065510..2066112 (+) | 603 | WP_033863222.1 | hypothetical protein | - |
| JMO09_RS10230 (JMO09_002046) | - | 2066125..2066265 (-) | 141 | WP_111689342.1 | hypothetical protein | - |
| JMO09_RS10235 (JMO09_002047) | - | 2066249..2067031 (-) | 783 | WP_111689343.1 | phage antirepressor KilAC domain-containing protein | - |
| JMO09_RS10240 (JMO09_002048) | - | 2067033..2067218 (-) | 186 | WP_000933365.1 | helix-turn-helix domain-containing protein | - |
| JMO09_RS14935 | - | 2067661..2067795 (+) | 135 | WP_001119050.1 | hypothetical protein | - |
| JMO09_RS10245 (JMO09_002049) | - | 2067792..2067995 (-) | 204 | WP_031905760.1 | hypothetical protein | - |
| JMO09_RS10250 (JMO09_002050) | - | 2068011..2068265 (-) | 255 | WP_031790429.1 | helix-turn-helix domain-containing protein | - |
| JMO09_RS10255 (JMO09_002051) | - | 2068456..2069094 (+) | 639 | WP_000874710.1 | XRE family transcriptional regulator | - |
| JMO09_RS10260 (JMO09_002052) | - | 2069146..2069649 (+) | 504 | WP_000825944.1 | hypothetical protein | - |
| JMO09_RS10265 (JMO09_002053) | - | 2069907..2070956 (+) | 1050 | WP_125571273.1 | site-specific integrase | - |
| JMO09_RS10310 (JMO09_002062) | - | 2072165..2072719 (-) | 555 | WP_000132890.1 | alpha/beta hydrolase | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17747.64 Da Isoelectric Point: 4.9816
>NTDB_id=593949 JMO09_RS10180 WP_000934768.1 2059676..2060146(-) (ssbA) [Staphylococcus aureus strain HL17064]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLTGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYKQQAQQSRGQSQYPYNKPVKDNPFANANDPIEIDDDDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLTGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYKQQAQQSRGQSQYPYNKPVKDNPFANANDPIEIDDDDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=593949 JMO09_RS10180 WP_000934768.1 2059676..2060146(-) (ssbA) [Staphylococcus aureus strain HL17064]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGACGGGCGTAGATGGTAGGTTACAAACGCGG
AATTATGAAAATAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACAAACAACAAGCGCAACAATCACGTGGACAGTCTCAATATCCATATAACAAAC
CAGTAAAAGATAATCCGTTCGCAAATGCGAATGATCCTATTGAAATAGATGACGATGATTTACCATTCTAA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGACGGGCGTAGATGGTAGGTTACAAACGCGG
AATTATGAAAATAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACAAACAACAAGCGCAACAATCACGTGGACAGTCTCAATATCCATATAACAAAC
CAGTAAAAGATAATCCGTTCGCAAATGCGAATGATCCTATTGAAATAGATGACGATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.367 |
100 |
0.628 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
51.765 |
100 |
0.564 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Neisseria meningitidis MC58 |
33.526 |
100 |
0.372 |
| ssb | Neisseria gonorrhoeae MS11 |
33.526 |
100 |
0.372 |
| ssb | Glaesserella parasuis strain SC1401 |
32.203 |
100 |
0.365 |