Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   KZZ50_RS10160 Genome accession   NZ_CP080251
Coordinates   2044764..2045234 (-) Length   156 a.a.
NCBI ID   WP_000934760.1    Uniprot ID   A0AAN2D761
Organism   Staphylococcus aureus strain NT_611     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2039764..2050234
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZZ50_RS10095 (KZZ50_10065) - 2040060..2040359 (-) 300 WP_000988332.1 HNH endonuclease -
  KZZ50_RS10100 (KZZ50_10070) - 2040591..2041007 (-) 417 WP_000590122.1 hypothetical protein -
  KZZ50_RS10105 (KZZ50_10075) - 2041035..2041235 (-) 201 WP_000265043.1 DUF1514 family protein -
  KZZ50_RS10110 (KZZ50_10080) - 2041235..2041384 (-) 150 WP_000237868.1 transcriptional activator RinB -
  KZZ50_RS10115 (KZZ50_10085) - 2041387..2041587 (-) 201 WP_001125015.1 hypothetical protein -
  KZZ50_RS10120 (KZZ50_10090) - 2041562..2041750 (-) 189 WP_000195823.1 DUF1381 domain-containing protein -
  KZZ50_RS10125 (KZZ50_10095) - 2041787..2042320 (-) 534 WP_001668923.1 dUTP diphosphatase -
  KZZ50_RS10130 (KZZ50_10100) - 2042313..2042561 (-) 249 WP_001065085.1 DUF1024 family protein -
  KZZ50_RS10135 (KZZ50_10105) - 2042576..2042818 (-) 243 WP_031865197.1 phi PVL orf 51-like protein -
  KZZ50_RS10140 (KZZ50_10110) - 2042822..2043190 (-) 369 WP_000101275.1 SA1788 family PVL leukocidin-associated protein -
  KZZ50_RS10145 (KZZ50_10115) - 2043203..2043607 (-) 405 WP_000401958.1 RusA family crossover junction endodeoxyribonuclease -
  KZZ50_RS10150 (KZZ50_10120) - 2043616..2043834 (-) 219 WP_000338530.1 hypothetical protein -
  KZZ50_RS10155 (KZZ50_10125) - 2043841..2044734 (-) 894 WP_031865196.1 DnaD domain-containing protein -
  KZZ50_RS10160 (KZZ50_10130) ssbA 2044764..2045234 (-) 471 WP_000934760.1 single-stranded DNA-binding protein Machinery gene
  KZZ50_RS10165 (KZZ50_10135) - 2045235..2045852 (-) 618 WP_071621397.1 MBL fold metallo-hydrolase -
  KZZ50_RS10170 (KZZ50_10140) - 2045933..2046853 (-) 921 WP_000138473.1 recombinase RecT -
  KZZ50_RS10175 (KZZ50_10145) - 2046855..2048798 (-) 1944 WP_031865195.1 AAA family ATPase -
  KZZ50_RS10180 (KZZ50_10150) - 2048807..2049070 (-) 264 WP_001205732.1 hypothetical protein -
  KZZ50_RS10185 (KZZ50_10155) - 2049079..2049339 (-) 261 WP_000291488.1 DUF1108 family protein -
  KZZ50_RS10190 (KZZ50_10160) - 2049432..2049593 (-) 162 WP_000066020.1 DUF1270 domain-containing protein -
  KZZ50_RS10195 (KZZ50_10165) - 2049590..2049910 (-) 321 WP_001120197.1 DUF771 domain-containing protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17641.52 Da        Isoelectric Point: 5.2672

>NTDB_id=591728 KZZ50_RS10160 WP_000934760.1 2044764..2045234(-) (ssbA) [Staphylococcus aureus strain NT_611]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIELNDDDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=591728 KZZ50_RS10160 WP_000934760.1 2044764..2045234(-) (ssbA) [Staphylococcus aureus strain NT_611]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAACTAAATGATGATGATTTACCATTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.932

100

0.635
  ssb Latilactobacillus sakei subsp. sakei 23K

50.588

100

0.551
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

67.949

0.404
  ssb Glaesserella parasuis strain SC1401

32.768

100

0.372
  ssb Neisseria meningitidis MC58

32.948

100

0.365
  ssb Neisseria gonorrhoeae MS11

32.948

100

0.365