Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   MSA_RS10890 Genome accession   NC_021486
Coordinates   2107551..2108780 (+) Length   409 a.a.
NCBI ID   WP_016481407.1    Uniprot ID   -
Organism   Streptococcus agalactiae ILRI005     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 2102551..2113780
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MSA_RS10865 (MSA_22500) - 2103712..2106291 (+) 2580 WP_016481406.1 YfhO family protein -
  MSA_RS10885 (MSA_22540) rlmH 2106871..2107350 (-) 480 WP_000768336.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  MSA_RS10890 (MSA_22550) htrA 2107551..2108780 (+) 1230 WP_016481407.1 trypsin-like peptidase domain-containing protein Regulator
  MSA_RS10895 (MSA_22560) spo0J 2108878..2109651 (+) 774 WP_016481408.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence


Protein


Download         Length: 409 a.a.        Molecular weight: 43193.62 Da        Isoelectric Point: 9.6436

>NTDB_id=59141 MSA_RS10890 WP_016481407.1 2107551..2108780(+) (htrA) [Streptococcus agalactiae ILRI005]
MKKKLVSSLLKCSLIIIVSFAGGAFASFVMNHNDNIPNGGVTKTSKVNYNNITPTTKAVKKVQNSVVSVINYKQQESRSD
LSDFYSHFFGNQGGNTDKGLQVYGEGSGVIYKKDGKNAYVVTNNHVIDGAKQIEIQLADGSKAVGKLVGSDTYSDLAVVK
IPSDKVSNIAEFADSSKLNIGETAIAIGSPLGTEYANSVTQGIVSSLKRTVTMTNEEGQTVSTNAIQTDAAINPGNSGGA
LINIEGQVIGINSSRISSTSNQTSGQSSGNSVEGMGFAIPSNDVVKIINQLESNGQVERPALGISMAGLSNLPSDVISKL
KIPSNVTNGIVVTSIQSGMPAQGKLKKYDVITKVDDKEVASRSDLQSLLYGHQVGDSITVTFYRGENKQTVTIKLTKTSK
DLGKQRANN

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=59141 MSA_RS10890 WP_016481407.1 2107551..2108780(+) (htrA) [Streptococcus agalactiae ILRI005]
GTGAAAAAAAAATTAGTCTCATCACTTCTAAAGTGTTCTCTAATCATTATTGTTAGCTTTGCTGGTGGAGCATTTGCTAG
TTTTGTCATGAATCATAATGACAATATTCCAAATGGTGGTGTCACTAAAACTAGTAAAGTAAATTATAATAACATAACGC
CTACAACAAAAGCTGTTAAAAAGGTACAAAATAGTGTTGTTTCTGTTATCAATTATAAACAACAAGAGAGTCGTTCTGAC
CTATCAGACTTCTATAGTCATTTTTTTGGTAATCAGGGGGGCAACACTGATAAGGGCTTACAAGTTTACGGTGAAGGCTC
TGGAGTCATCTATAAAAAAGATGGTAAAAATGCCTATGTTGTCACTAATAACCACGTCATTGATGGGGCTAAACAAATTG
AAATTCAACTAGCTGATGGCTCAAAAGCAGTTGGGAAACTTGTTGGGTCAGATACCTACTCTGATTTAGCCGTCGTCAAA
ATTCCATCAGATAAAGTTTCAAATATTGCAGAATTTGCTGATTCATCAAAACTCAACATTGGTGAAACTGCTATAGCGAT
CGGAAGCCCTCTTGGAACTGAATATGCAAATTCTGTAACTCAAGGTATTGTATCTAGTTTAAAAAGAACTGTAACAATGA
CTAATGAAGAAGGACAAACAGTTTCTACAAATGCTATCCAGACTGATGCTGCTATCAATCCTGGTAATTCAGGTGGAGCA
CTTATCAATATTGAAGGACAGGTTATTGGAATTAATTCTAGTAGAATTTCTTCTACATCAAATCAAACCTCAGGACAATC
GTCAGGAAATAGCGTTGAAGGTATGGGATTTGCCATTCCTTCAAATGATGTTGTTAAGATTATCAATCAACTTGAGAGTA
ACGGACAAGTAGAGAGACCTGCTCTAGGTATTTCTATGGCTGGATTAAGTAATTTACCATCCGATGTTATTAGTAAACTG
AAAATCCCAAGTAATGTTACTAATGGTATTGTAGTAACATCTATCCAATCTGGCATGCCAGCTCAAGGCAAACTAAAGAA
ATACGATGTCATTACTAAAGTTGACGATAAAGAAGTAGCATCTCGAAGTGATTTACAAAGTTTACTCTATGGCCACCAGG
TAGGGGATTCCATAACAGTAACCTTTTATCGTGGTGAAAATAAACAAACAGTCACTATAAAACTTACTAAAACTAGTAAA
GATTTAGGTAAACAACGAGCAAATAACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mutans UA159

63.104

96.088

0.606

  htrA Streptococcus gordonii str. Challis substr. CH1

57.107

98.044

0.56

  htrA Streptococcus mitis NCTC 12261

56.281

97.311

0.548

  htrA Streptococcus pneumoniae TIGR4

54.791

99.511

0.545

  htrA Streptococcus pneumoniae Rx1

54.791

99.511

0.545

  htrA Streptococcus pneumoniae D39

54.791

99.511

0.545

  htrA Streptococcus pneumoniae R6

54.791

99.511

0.545


Multiple sequence alignment