Detailed information    

insolico Bioinformatically predicted

Overview


Name   spo0J   Type   Regulator
Locus tag   MSA_RS10895 Genome accession   NC_021486
Coordinates   2108878..2109651 (+) Length   257 a.a.
NCBI ID   WP_016481408.1    Uniprot ID   -
Organism   Streptococcus agalactiae ILRI005     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 2103878..2114651
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MSA_RS10885 (MSA_22540) rlmH 2106871..2107350 (-) 480 WP_000768336.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  MSA_RS10890 (MSA_22550) htrA 2107551..2108780 (+) 1230 WP_016481407.1 trypsin-like peptidase domain-containing protein Regulator
  MSA_RS10895 (MSA_22560) spo0J 2108878..2109651 (+) 774 WP_016481408.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence


Protein


Download         Length: 257 a.a.        Molecular weight: 29251.81 Da        Isoelectric Point: 10.0836

>NTDB_id=59142 MSA_RS10895 WP_016481408.1 2108878..2109651(+) (spo0J) [Streptococcus agalactiae ILRI005]
MEYLETININHIAPNPYQPRLKFNTKELEELANSIKINGLIQPIIVRPSAVFGYELVAGERRLRAAKLAKLESIPAIIKS
YNNDDSMQLAIVENLQRSNLSPIEEAKAYSQLLQKKSMTHEELAKYMGKSRPYISNTIRLLNLPPLITSAIEEGKLSSGH
ARALLSLPDASQQKDWYQRILTEDISVRRLEKLLKQEKKTNHKSLQNKDIFLKHQENELAQFLGSKVKLTINKDGAGNIK
IAFANQEELNRIINTLK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=59142 MSA_RS10895 WP_016481408.1 2108878..2109651(+) (spo0J) [Streptococcus agalactiae ILRI005]
ATGGAATATTTAGAAACGATCAACATCAATCATATTGCTCCAAATCCGTATCAACCTCGCCTAAAATTTAATACAAAAGA
ACTAGAAGAATTAGCCAACTCTATTAAAATTAATGGCCTTATTCAACCCATTATTGTAAGACCGTCAGCAGTCTTTGGTT
ACGAACTGGTAGCCGGAGAACGACGGCTAAGAGCCGCAAAGTTAGCTAAATTGGAAAGTATACCTGCAATTATAAAATCC
TATAATAATGATGATAGTATGCAATTAGCTATTGTCGAAAATTTACAACGATCTAATTTGTCACCTATTGAAGAGGCTAA
AGCCTACTCTCAACTTCTACAAAAGAAAAGTATGACACATGAAGAGTTAGCAAAATATATGGGAAAATCTCGCCCCTATA
TATCAAATACGATACGACTACTAAATTTACCGCCACTAATTACTTCAGCTATTGAAGAAGGAAAACTTTCCTCTGGTCAT
GCGCGTGCACTACTCAGTCTACCAGATGCTAGTCAACAGAAAGATTGGTATCAGAGAATCCTCACTGAAGATATTAGTGT
AAGACGACTAGAGAAGTTATTAAAACAAGAAAAGAAAACAAATCATAAGTCACTTCAAAATAAAGATATCTTTCTAAAAC
ATCAAGAAAATGAGTTAGCTCAATTTCTAGGTAGCAAAGTGAAACTTACTATTAATAAAGATGGTGCTGGCAATATAAAG
ATTGCTTTCGCTAACCAAGAAGAATTAAACAGAATTATCAACACTCTAAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

58.039

99.222

0.576


Multiple sequence alignment