Detailed information NTG0589764

Bioinformatically predicted

Overview

• Name: dprA/cilB/dalA
• Type: Machinery gene
• Locus tag: LPB404_RS05530
• Genome accession: NZ_CP079821
• Coordinates: 1086021..1086863 (+)
• Length: 280 a.a.
• NCBI ID: WP_219074284.1
• Uniprot ID: -
• Organism: Streptococcus rubneri strain LPB0404
• Function: ssDNA binding; loading RecA onto ssDNA (predicted from homology) DNA processing

Genomic Context

Location: 1081021..1091863

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LPB404_RS05505 (LPB404_05505)	dapA	1081926..1082861 (+)	936	WP_219074281.1	4-hydroxy-tetrahydrodipicolinate synthase	-
LPB404_RS05510 (LPB404_05510)	-	1082933..1083271 (+)	339	WP_006597242.1	ATP cone domain-containing protein	-
LPB404_RS05515 (LPB404_05515)	ylqF	1083397..1084248 (+)	852	WP_219074282.1	ribosome biogenesis GTPase YlqF	-
LPB404_RS05520 (LPB404_05520)	-	1084235..1085005 (+)	771	WP_219074283.1	ribonuclease HII	-
LPB404_RS05525 (LPB404_05525)	-	1085018..1085944 (+)	927	WP_123160226.1	ROK family protein	-
LPB404_RS05530 (LPB404_05530)	dprA/cilB/dalA	1086021..1086863 (+)	843	WP_219074284.1	DNA-processing protein DprA	Machinery gene
LPB404_RS05535 (LPB404_05535)	topA	1086956..1089043 (+)	2088	WP_219074285.1	type I DNA topoisomerase	-
LPB404_RS05540 (LPB404_05540)	-	1089151..1089828 (+)	678	WP_219074286.1	SatD family protein	-
LPB404_RS05545 (LPB404_05545)	-	1089812..1090516 (+)	705	WP_023026806.1	DUF3307 domain-containing protein	-

Sequence

Protein

• Length: 280 a.a.
• Molecular weight: 31351.04 Da
• Isoelectric Point: 6.4978

>NTDB_id=589764 LPB404_RS05530 WP_219074284.1 1086021..1086863(+) (dprA/cilB/dalA) [Streptococcus rubneri strain LPB0404]
MNKYELYKLKVAGLSNLQVFSIVNYWEMNGEWPSLELIAKIAGCRNQTLFMERYIRIDDKVLMEEFKEFDSISIMDSEYP
EELLWMHNPPVLLFYSGNIDLLKHPKIAVVGSRSCSRTGIQSVEKIINELNNELIVVSGLAKGIDAAAHYAAIRNGGKTI
GVIGTGLDVFYPRSNKQLQKYMSGSHLVLTEYGPGQSPQKHHFPERNRIIAGLSRAVIVAEARMRSGSLITCERAMEEGR
DVFAIPGSILDGRSDGCHHLIQEGAKLVTSGKDVLDEFEF

Nucleotide

• Length: 843 bp

>NTDB_id=589764 LPB404_RS05530 WP_219074284.1 1086021..1086863(+) (dprA/cilB/dalA) [Streptococcus rubneri strain LPB0404]
ATGAACAAATATGAACTTTATAAATTAAAGGTTGCTGGCCTGTCTAATCTACAGGTTTTTAGCATTGTCAATTACTGGGA
AATGAATGGGGAATGGCCTTCTTTAGAATTAATAGCAAAAATTGCAGGATGTCGCAATCAAACACTTTTTATGGAACGAT
ATATTCGGATTGATGACAAGGTCTTGATGGAGGAGTTCAAAGAGTTTGATTCGATATCCATTATGGATTCAGAATATCCT
GAAGAACTTCTTTGGATGCATAACCCACCTGTTTTGTTGTTTTACTCAGGTAATATTGACCTTCTTAAACATCCCAAAAT
AGCAGTTGTGGGGAGTCGATCCTGCAGTCGCACAGGGATTCAATCTGTCGAAAAAATTATTAATGAGTTAAACAACGAAT
TGATTGTGGTGAGTGGATTAGCCAAGGGGATAGATGCTGCGGCTCATTATGCAGCTATTCGAAATGGAGGAAAAACAATT
GGTGTGATTGGTACTGGGTTAGATGTCTTCTATCCTAGATCTAATAAACAGTTGCAGAAGTACATGAGTGGGAGCCATTT
GGTTTTAACAGAATACGGTCCTGGCCAAAGCCCTCAAAAACACCATTTTCCAGAGCGTAATCGGATTATTGCTGGTCTTT
CTAGAGCGGTGATTGTGGCAGAAGCGCGGATGAGGTCTGGGAGTCTGATCACTTGTGAGCGTGCTATGGAAGAAGGTCGT
GATGTTTTCGCTATTCCAGGTTCTATATTGGATGGTCGTTCTGATGGTTGTCATCACCTCATTCAAGAAGGAGCAAAGCT
TGTGACCAGTGGAAAAGATGTCCTAGATGAGTTTGAATTTTAA

Domains

Predicted by InterproScan.

• DNA processing protein A sterile alpha motif domain (SAM_DprA) (1-62)

• DNA recombination-mediator protein A (DNA_processg_A) (69-269)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
dprA/cilB/dalA	Streptococcus mitis SK321	68.929	100	0.689
dprA/cilB/dalA	Streptococcus mitis NCTC 12261	68.214	100	0.682
dprA/cilB/dalA	Streptococcus pneumoniae Rx1	67.857	100	0.679
dprA/cilB/dalA	Streptococcus pneumoniae D39	67.857	100	0.679
dprA/cilB/dalA	Streptococcus pneumoniae R6	67.857	100	0.679
dprA/cilB/dalA	Streptococcus pneumoniae TIGR4	67.857	100	0.679
dprA	Streptococcus mutans UA159	57.5	100	0.575
dprA	Lactococcus lactis subsp. cremoris KW2	53.571	100	0.536
dprA	Legionella pneumophila strain ERS1305867	39.098	95	0.371