Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   LPB400_RS03775 Genome accession   NZ_CP079818
Coordinates   780936..781223 (+) Length   95 a.a.
NCBI ID   WP_036472233.1    Uniprot ID   A0A4D7WS56
Organism   Neisseria perflava strain LPB0400     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 775936..786223
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB400_RS03775 (LPB400_03780) comE 780936..781223 (+) 288 WP_036472233.1 helix-hairpin-helix domain-containing protein Machinery gene
  LPB400_RS03780 (LPB400_03785) comP 781418..781912 (+) 495 WP_219089457.1 type IV pilin protein Machinery gene
  LPB400_RS03785 (LPB400_03790) - 781992..782816 (-) 825 WP_107792448.1 undecaprenyl-diphosphate phosphatase -
  LPB400_RS03790 (LPB400_03795) dsbA1 782861..783502 (-) 642 WP_107768929.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  LPB400_RS03795 (LPB400_03800) - 783514..784614 (-) 1101 WP_107768915.1 SPOR domain-containing protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 9763.42 Da        Isoelectric Point: 10.4923

>NTDB_id=589634 LPB400_RS03775 WP_036472233.1 780936..781223(+) (comE) [Neisseria perflava strain LPB0400]
MKKFLFGAFAAVCAAFSLAAVNINTASSAELEALPGIGPAKAKSIVEYRQKNGAFKSVEELKNVKGIGDAVLNKLKAEAT
VSSAAPKAAQPAVKK

Nucleotide


Download         Length: 288 bp        

>NTDB_id=589634 LPB400_RS03775 WP_036472233.1 780936..781223(+) (comE) [Neisseria perflava strain LPB0400]
ATGAAGAAATTTTTATTTGGTGCATTTGCCGCCGTCTGTGCAGCATTCTCTTTGGCCGCCGTGAATATCAATACCGCGTC
TTCTGCCGAACTGGAGGCTTTGCCGGGTATCGGTCCGGCTAAGGCGAAATCGATTGTGGAATACCGTCAGAAGAACGGTG
CGTTCAAATCGGTGGAGGAGCTGAAAAACGTGAAGGGCATCGGTGATGCGGTGCTGAACAAGTTAAAGGCGGAGGCGACG
GTTTCTTCTGCCGCGCCTAAGGCCGCACAGCCTGCCGTGAAAAAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(20-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4D7WS56

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

62.626

100

0.653
  comE Neisseria gonorrhoeae MS11

62.626

100

0.653
  comE Neisseria gonorrhoeae MS11

62.626

100

0.653
  comE Neisseria gonorrhoeae MS11

62.626

100

0.653
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

54.321

85.263

0.463
  comEA Vibrio parahaemolyticus RIMD 2210633

44.186

90.526

0.4