Detailed information    

insolico Bioinformatically predicted

Overview

Name   dsbA1   Type   Machinery gene
Locus tag   LPB400_RS03790 Genome accession   NZ_CP079818
Coordinates   782861..783502 (-) Length   213 a.a.
NCBI ID   WP_107768929.1    Uniprot ID   -
Organism   Neisseria perflava strain LPB0400     
Function   DNA binding and uptake; interact with PilQ (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 777861..788502
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB400_RS03775 (LPB400_03780) comE 780936..781223 (+) 288 WP_036472233.1 helix-hairpin-helix domain-containing protein Machinery gene
  LPB400_RS03780 (LPB400_03785) comP 781418..781912 (+) 495 WP_219089457.1 type IV pilin protein Machinery gene
  LPB400_RS03785 (LPB400_03790) - 781992..782816 (-) 825 WP_107792448.1 undecaprenyl-diphosphate phosphatase -
  LPB400_RS03790 (LPB400_03795) dsbA1 782861..783502 (-) 642 WP_107768929.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  LPB400_RS03795 (LPB400_03800) - 783514..784614 (-) 1101 WP_107768915.1 SPOR domain-containing protein -
  LPB400_RS03800 (LPB400_03805) comM 784769..786265 (-) 1497 WP_107768914.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LPB400_RS03805 (LPB400_03810) - 786279..786599 (-) 321 WP_003684455.1 accessory factor UbiK family protein -
  LPB400_RS03810 (LPB400_03815) metK 786709..787878 (-) 1170 WP_107768913.1 methionine adenosyltransferase -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23761.51 Da        Isoelectric Point: 9.8951

>NTDB_id=589636 LPB400_RS03790 WP_107768929.1 782861..783502(-) (dsbA1) [Neisseria perflava strain LPB0400]
MKQRIKQTIAALSLSLLSLSAQAATEGVDYTVLSRSILQQQAGKIEVLEFFGYFCVHCYHLDPVLLQHSKTFAKDVSLRT
EHVVWMPEMLGLAKVAAAVNLSGLKYQANPVIFKAVYEQKINLADTNVFRSWVGKQTSFDSQKLLQAYNSPTAASAAAKM
QQLTETYRIENTPTVIVGGKYKVNFNGTDWKAGMKTIDELIVKVRREQSSKPL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=589636 LPB400_RS03790 WP_107768929.1 782861..783502(-) (dsbA1) [Neisseria perflava strain LPB0400]
ATGAAGCAGCGTATAAAACAAACCATTGCCGCACTCAGCCTGAGCCTGCTCAGTCTGAGTGCGCAAGCTGCTACCGAGGG
CGTGGACTATACTGTCCTCAGTCGCTCTATTCTGCAGCAACAAGCTGGAAAAATTGAAGTACTTGAGTTTTTCGGCTATT
TCTGCGTTCATTGTTACCATCTCGATCCAGTTTTGTTGCAACACAGCAAAACCTTTGCCAAAGATGTTTCCTTACGGACA
GAACACGTCGTTTGGATGCCTGAAATGTTAGGCTTGGCCAAAGTAGCCGCTGCCGTTAATCTTTCAGGTTTGAAATATCA
AGCCAATCCAGTCATCTTCAAAGCAGTTTACGAACAAAAAATCAACCTGGCTGATACCAATGTATTCCGATCATGGGTGG
GTAAACAGACGAGTTTTGACAGTCAAAAACTGCTTCAAGCCTATAACAGTCCTACTGCCGCATCGGCTGCTGCAAAAATG
CAGCAATTGACGGAAACTTATCGAATTGAAAACACACCAACTGTCATCGTCGGTGGTAAATACAAAGTCAATTTCAACGG
TACCGACTGGAAAGCCGGTATGAAAACCATAGACGAGCTCATCGTCAAAGTCCGCCGCGAACAATCCTCAAAACCACTTT
AA

Domains

Predicted by InterproScan.

Thioredoxin (Thioredoxin_4)

(44-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dsbA1 Neisseria meningitidis MC58

58.289

87.793

0.512
  dsbA2 Neisseria meningitidis MC58

57.754

87.793

0.507