Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   LPB400_RS03780 Genome accession   NZ_CP079818
Coordinates   781418..781912 (+) Length   164 a.a.
NCBI ID   WP_219089457.1    Uniprot ID   -
Organism   Neisseria perflava strain LPB0400     
Function   DNA binding; DNA uptake; receptor of DNA uptake sequence (DUS) (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 776418..786912
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB400_RS03775 (LPB400_03780) comE 780936..781223 (+) 288 WP_036472233.1 helix-hairpin-helix domain-containing protein Machinery gene
  LPB400_RS03780 (LPB400_03785) comP 781418..781912 (+) 495 WP_219089457.1 type IV pilin protein Machinery gene
  LPB400_RS03785 (LPB400_03790) - 781992..782816 (-) 825 WP_107792448.1 undecaprenyl-diphosphate phosphatase -
  LPB400_RS03790 (LPB400_03795) dsbA1 782861..783502 (-) 642 WP_107768929.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  LPB400_RS03795 (LPB400_03800) - 783514..784614 (-) 1101 WP_107768915.1 SPOR domain-containing protein -
  LPB400_RS03800 (LPB400_03805) comM 784769..786265 (-) 1497 WP_107768914.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LPB400_RS03805 (LPB400_03810) - 786279..786599 (-) 321 WP_003684455.1 accessory factor UbiK family protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 17920.96 Da        Isoelectric Point: 10.0610

>NTDB_id=589635 LPB400_RS03780 WP_219089457.1 781418..781912(+) (comP) [Neisseria perflava strain LPB0400]
MYLKAFDGKRNGAAVQRGYSLIQLLVVMLLVSILATAALTAYRESVRSANLRAAHAALLENARFMEQFYAKKGSFKLTST
KWPELPVKEAGGFCIRMNGQAKGILEGKFTLKAVALDREAEPRVLRLNESLTAVVCGKMKVKGSCTDGEEIFRGNDAECK
PFGA

Nucleotide


Download         Length: 495 bp        

>NTDB_id=589635 LPB400_RS03780 WP_219089457.1 781418..781912(+) (comP) [Neisseria perflava strain LPB0400]
ATGTACTTAAAAGCATTTGACGGAAAACGGAATGGGGCAGCTGTACAGAGGGGCTACTCCTTGATACAGCTGTTGGTGGT
GATGCTGCTGGTTTCGATATTGGCGACGGCGGCATTGACTGCCTATCGGGAGTCAGTCCGTTCGGCCAACTTGCGTGCGG
CTCATGCCGCCCTGCTGGAAAATGCGCGCTTTATGGAGCAGTTCTATGCGAAAAAGGGCAGCTTTAAGCTGACGTCGACG
AAGTGGCCGGAGCTGCCGGTGAAGGAGGCGGGCGGTTTCTGCATTCGGATGAACGGTCAGGCTAAGGGGATCCTGGAAGG
GAAGTTTACCCTGAAGGCGGTGGCTCTGGACAGGGAGGCGGAGCCGAGAGTATTACGCTTGAACGAGTCGTTGACGGCGG
TAGTGTGCGGGAAGATGAAGGTGAAGGGAAGCTGTACGGACGGTGAGGAGATATTTAGGGGTAATGATGCGGAGTGTAAA
CCATTTGGCGCATAG

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(41-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Neisseria subflava NJ9703

93.827

98.78

0.927
  comP Neisseria meningitidis 8013

51.02

89.634

0.457
  comP Neisseria gonorrhoeae MS11

51.034

88.415

0.451