Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   LPB400_RS01440 Genome accession   NZ_CP079818
Coordinates   272585..273775 (-) Length   396 a.a.
NCBI ID   WP_219089156.1    Uniprot ID   -
Organism   Neisseria perflava strain LPB0400     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 267585..278775
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB400_RS01420 (LPB400_01425) - 268634..268885 (-) 252 WP_003679513.1 YfhL family 4Fe-4S dicluster ferredoxin -
  LPB400_RS01425 (LPB400_01430) rsmD 269008..269580 (-) 573 WP_070461210.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  LPB400_RS01430 (LPB400_01435) topA 269725..272031 (-) 2307 WP_219089154.1 type I DNA topoisomerase -
  LPB400_RS01435 (LPB400_01440) - 272105..272560 (-) 456 WP_070461207.1 DUF494 family protein -
  LPB400_RS01440 (LPB400_01445) dprA 272585..273775 (-) 1191 WP_219089156.1 DNA-processing protein DprA Machinery gene
  LPB400_RS01445 (LPB400_01450) - 273870..274106 (-) 237 WP_070461203.1 hypothetical protein -
  LPB400_RS01450 (LPB400_01455) - 274492..275766 (-) 1275 WP_219089159.1 sigma-54 dependent transcriptional regulator -
  LPB400_RS01455 (LPB400_01460) - 275753..277879 (-) 2127 WP_219089161.1 PAS domain-containing sensor histidine kinase -
  LPB400_RS01460 (LPB400_01465) - 277883..278476 (-) 594 WP_049322230.1 DUF4390 domain-containing protein -

Sequence

Protein


Download         Length: 396 a.a.        Molecular weight: 42756.67 Da        Isoelectric Point: 5.8091

>NTDB_id=589624 LPB400_RS01440 WP_219089156.1 272585..273775(-) (dprA) [Neisseria perflava strain LPB0400]
MTENERFAWLQLAFTPYIGAESFLVLLQQFGSAQAALNAPADRIAALVRHKQATESWRHADKRALAQRSAEAALQWETQD
GCRLLLLQDDDFPEMLTQGITAPPVLFLRGNAELLHTPSAAIVGSRHATPQAMRIAKDFGRALSEKGIPVVSGMASGIDT
AAHQGALQADGGTIAVWGTGIDRIYPPSNKNLAYEIAEKGLIVSEFPLDTRPFAGNFPRRNRLIAALSQLTLVVEAALES
GSLITAKLAAEMGREVMAVPGSIDNPHSKGCHKLIKDGAKLVECLDDILHECPQLLQNTPVPSYSINKTVKPKNDQTEHL
QPKTIADEPQRPSENLSAAPSTSALLEAMGYDPIHPDILAQQTNTAAADVYAQLLEYELDGIVAALPGGRYQRVKA

Nucleotide


Download         Length: 1191 bp        

>NTDB_id=589624 LPB400_RS01440 WP_219089156.1 272585..273775(-) (dprA) [Neisseria perflava strain LPB0400]
ATGACGGAAAACGAGCGTTTTGCTTGGTTGCAACTGGCATTTACGCCCTATATCGGTGCAGAAAGTTTTTTGGTGCTGTT
GCAGCAATTCGGTAGCGCACAAGCTGCCTTGAATGCGCCGGCAGATAGAATTGCCGCGTTGGTACGCCATAAACAGGCGA
CCGAGTCGTGGCGTCATGCGGACAAACGGGCTTTGGCGCAGCGGTCTGCTGAAGCCGCTTTACAATGGGAAACGCAGGAC
GGTTGCCGTTTGTTGCTGCTGCAAGATGATGATTTCCCCGAAATGCTGACACAAGGCATTACCGCGCCGCCGGTTTTGTT
TTTACGCGGTAATGCAGAGTTGTTGCACACACCTTCTGCCGCGATTGTCGGCAGCCGCCATGCCACGCCGCAGGCAATGC
GGATTGCCAAAGATTTCGGCAGGGCATTGAGTGAAAAAGGCATTCCCGTCGTATCGGGTATGGCTTCGGGTATCGATACC
GCCGCCCATCAAGGCGCATTGCAGGCAGATGGCGGTACCATTGCCGTCTGGGGAACCGGTATAGACCGCATTTATCCGCC
GTCCAATAAAAACCTTGCTTATGAAATTGCTGAAAAAGGATTGATTGTCAGCGAGTTCCCTTTGGATACGCGTCCATTTG
CAGGCAATTTTCCTCGCCGCAACCGTCTGATTGCCGCGTTGTCGCAGCTGACATTGGTGGTAGAAGCGGCATTGGAATCC
GGCTCATTGATTACCGCCAAGCTGGCGGCGGAGATGGGGCGCGAAGTGATGGCAGTGCCCGGTTCGATAGACAATCCGCA
CAGCAAAGGCTGCCACAAGTTGATTAAAGACGGGGCAAAATTGGTGGAATGTTTGGACGATATTCTCCATGAGTGTCCGC
AGCTATTGCAAAATACGCCTGTTCCATCATATTCTATAAATAAGACGGTCAAACCGAAAAACGATCAAACCGAACATCTG
CAACCCAAAACAATAGCAGATGAACCGCAAAGGCCGTCTGAAAACCTATCTGCCGCCCCATCAACAAGCGCTTTATTGGA
AGCAATGGGTTACGACCCGATACATCCCGATATTTTGGCGCAACAAACCAATACGGCAGCGGCAGACGTGTACGCACAGC
TTTTGGAATACGAACTTGACGGTATCGTTGCTGCCTTGCCGGGCGGTCGTTATCAGCGTGTCAAAGCATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(79-283)

DprA winged helix domain (DprA_WH)

(331-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Neisseria meningitidis strain C311

76.768

100

0.768
  dprA Neisseria meningitidis MC58

76.768

100

0.768
  dprA Neisseria gonorrhoeae MS11

75.879

100

0.763
  dprA Neisseria gonorrhoeae strain FA1090

75.377

100

0.758
  dprA Vibrio cholerae strain A1552

38.071

99.495

0.379
  dprA Vibrio campbellii strain DS40M4

37.726

97.727

0.369
  dprA Glaesserella parasuis strain SC1401

44.688

80.808

0.361