Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   KX728_RS09110 Genome accession   NZ_CP079724
Coordinates   1887295..1887957 (-) Length   220 a.a.
NCBI ID   WP_215804216.1    Uniprot ID   -
Organism   Streptococcus oralis strain 34     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1882295..1892957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KX728_RS09090 (KX728_09085) rplI 1882839..1883291 (-) 453 WP_000864208.1 50S ribosomal protein L9 -
  KX728_RS09095 (KX728_09090) - 1883288..1885261 (-) 1974 WP_000739974.1 DHH family phosphoesterase -
  KX728_RS09100 (KX728_09095) - 1885407..1886585 (-) 1179 WP_009013605.1 acetyl-CoA C-acetyltransferase -
  KX728_RS09105 (KX728_09100) hpf 1886667..1887215 (-) 549 WP_000599111.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  KX728_RS09110 (KX728_09105) comFC/cflB 1887295..1887957 (-) 663 WP_215804216.1 ComF family protein Machinery gene
  KX728_RS09115 (KX728_09110) comFA/cflA 1887954..1889252 (-) 1299 WP_215804215.1 DEAD/DEAH box helicase Machinery gene
  KX728_RS09120 (KX728_09115) - 1889309..1889944 (+) 636 WP_215804214.1 YigZ family protein -
  KX728_RS09125 (KX728_09120) - 1889960..1890403 (+) 444 WP_215804213.1 PH domain-containing protein -
  KX728_RS09130 (KX728_09125) cysK 1890500..1891426 (+) 927 WP_215804212.1 cysteine synthase A -
  KX728_RS09135 (KX728_09130) tsf 1891530..1892570 (-) 1041 WP_215804211.1 translation elongation factor Ts -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 25322.11 Da        Isoelectric Point: 5.4506

>NTDB_id=589008 KX728_RS09110 WP_215804216.1 1887295..1887957(-) (comFC/cflB) [Streptococcus oralis strain 34]
MNCLLCGQTIKSDLTFSHLLLFKNENNYLCSDCESTFEKIGEDYCPNCMKTGLSTMCQDCKFWCKEEIRVDHNAIFTYNQ
AMKDFFSRYKFDGDFLLRKVFAPVLANELKKYGDYQFVVIPLSPERLLERGFNQVEGLVEVAGFSFQDLLGKREETASSS
KNRSERLATEIPFFIKTEDPLPKKILVIDDIYTTGATVNRVKRLFEEAGALEVKTFSLVR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=589008 KX728_RS09110 WP_215804216.1 1887295..1887957(-) (comFC/cflB) [Streptococcus oralis strain 34]
ATGAACTGTTTATTATGTGGACAGACAATAAAGAGTGACTTGACATTTAGTCACCTCTTGCTGTTTAAGAATGAGAACAA
CTATCTTTGTTCAGATTGTGAGTCTACTTTTGAGAAAATTGGTGAGGACTATTGCCCGAACTGTATGAAAACAGGACTGT
CAACTATGTGTCAAGATTGTAAATTTTGGTGTAAAGAAGAGATTCGAGTCGATCATAATGCAATCTTCACCTATAATCAA
GCTATGAAAGACTTCTTTAGTCGATATAAGTTTGATGGGGATTTTCTGCTTAGAAAGGTTTTTGCTCCTGTTCTAGCTAA
TGAATTGAAAAAGTATGGAGACTATCAATTTGTTGTTATTCCCCTAAGTCCTGAAAGATTGCTTGAGAGGGGATTTAACC
AGGTTGAAGGTTTGGTTGAGGTAGCAGGTTTTTCTTTTCAAGATTTACTAGGGAAAAGAGAAGAGACGGCTAGTTCTTCT
AAGAATCGCTCGGAACGATTAGCTACCGAAATTCCATTTTTTATAAAAACTGAAGACCCTCTTCCTAAGAAAATTTTGGT
TATTGATGACATCTATACAACAGGTGCGACTGTCAATCGTGTGAAGCGTCTTTTTGAAGAAGCAGGTGCTTTGGAAGTTA
AAACTTTTTCCCTTGTAAGATGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(162-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis SK321

78.182

100

0.782
  comFC/cflB Streptococcus mitis NCTC 12261

76.364

100

0.764
  comFC/cflB Streptococcus pneumoniae D39

75.909

100

0.759
  comFC/cflB Streptococcus pneumoniae R6

75.909

100

0.759
  comFC/cflB Streptococcus pneumoniae Rx1

75.909

100

0.759
  comFC/cflB Streptococcus pneumoniae TIGR4

75.909

100

0.759
  comFC Bacillus subtilis subsp. subtilis str. 168

35.526

100

0.368