Detailed information    

insolico Bioinformatically predicted

Overview

Name   micA   Type   Regulator
Locus tag   KX728_RS04510 Genome accession   NZ_CP079724
Coordinates   901513..902220 (+) Length   235 a.a.
NCBI ID   WP_000722058.1    Uniprot ID   -
Organism   Streptococcus oralis strain 34     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 896513..907220
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KX728_RS04485 (KX728_04480) - 896811..897482 (+) 672 WP_000151547.1 GTP pyrophosphokinase family protein -
  KX728_RS04490 (KX728_04485) - 897466..898284 (+) 819 WP_000799063.1 NAD kinase -
  KX728_RS04495 (KX728_04490) - 898281..899177 (+) 897 WP_215804697.1 RluA family pseudouridine synthase -
  KX728_RS04500 (KX728_04495) pta 899221..900195 (+) 975 WP_049478210.1 phosphate acetyltransferase -
  KX728_RS04505 (KX728_04500) mutY 900278..901456 (+) 1179 WP_000886126.1 A/G-specific adenine glycosylase -
  KX728_RS04510 (KX728_04505) micA 901513..902220 (+) 708 WP_000722058.1 response regulator YycF Regulator
  KX728_RS04515 (KX728_04510) micB 902213..903562 (+) 1350 WP_000568721.1 cell wall metabolism sensor histidine kinase VicK Regulator
  KX728_RS04520 (KX728_04515) vicX 903564..904373 (+) 810 WP_001290610.1 MBL fold metallo-hydrolase Regulator
  KX728_RS04525 (KX728_04520) - 904480..906351 (+) 1872 WP_000150976.1 Eco57I restriction-modification methylase domain-containing protein -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 27005.85 Da        Isoelectric Point: 4.6177

>NTDB_id=588975 KX728_RS04510 WP_000722058.1 901513..902220(+) (micA) [Streptococcus oralis strain 34]
MKKILIVDDEKPISDIIKFNMAKEGYEVVTAFNGREAIELFEAEQPDIIILDLMLPEIDGLEVAKAIRKTSSVPIIMLSA
KDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTDLVSVDSQESDEKKTQPLQIGDLEIVPDAYVAKKYGEELDL
THREFELLYHLASHIGQVITREHLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNND

Nucleotide


Download         Length: 708 bp        

>NTDB_id=588975 KX728_RS04510 WP_000722058.1 901513..902220(+) (micA) [Streptococcus oralis strain 34]
ATGAAAAAAATATTAATTGTAGATGATGAGAAACCAATCTCAGATATTATTAAGTTTAATATGGCCAAGGAAGGTTATGA
AGTCGTTACAGCCTTCAATGGTCGTGAGGCAATCGAGCTATTTGAAGCAGAGCAACCAGATATTATTATCCTCGACTTGA
TGCTACCTGAAATTGATGGTTTAGAAGTTGCTAAAGCTATTCGTAAGACTAGTAGCGTGCCGATTATCATGCTATCAGCT
AAGGATAGCGAGTTTGACAAGGTTATTGGTTTAGAGTTAGGTGCAGACGATTATGTTACAAAACCTTTCTCAAACCGTGA
ATTGCAGGCTCGTGTCAAGGCCCTGCTTCGTCGTACAGACCTGGTTTCTGTGGATAGCCAAGAGTCTGATGAGAAGAAGA
CGCAACCTTTACAAATTGGTGATTTGGAAATTGTTCCAGATGCTTACGTGGCGAAGAAATATGGTGAGGAATTAGATTTG
ACCCACCGTGAGTTTGAACTCTTGTATCACTTGGCGTCTCATATTGGTCAAGTGATTACGCGTGAACATTTGCTTGAGAC
TGTATGGGGTTATGACTATTTTGGTGATGTTCGTACTGTGGACGTGACCATTAGACGCTTGCGTGAGAAAATAGAAGACA
CTCCAAGTCGTCCAGAGTACATTCTCACACGTCGTGGTGTTGGATACTATATGAGAAATAATGATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  micA Streptococcus pneumoniae Cp1015

92.308

99.574

0.919
  vicR Streptococcus mutans UA159

77.447

100

0.774
  covR Streptococcus salivarius strain HSISS4

43.723

98.298

0.43
  covR Lactococcus lactis subsp. lactis strain DGCC12653

43.29

98.298

0.426
  scnR Streptococcus mutans UA159

37.179

99.574

0.37