Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   KX728_RS01285 Genome accession   NZ_CP079724
Coordinates   239965..241461 (+) Length   498 a.a.
NCBI ID   WP_215805067.1    Uniprot ID   -
Organism   Streptococcus oralis strain 34     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 234965..246461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KX728_RS01265 (KX728_01265) endA 235100..235924 (+) 825 WP_215805069.1 DNA/RNA non-specific endonuclease Machinery gene
  KX728_RS01270 (KX728_01270) - 236069..237400 (+) 1332 WP_061421650.1 hemolysin family protein -
  KX728_RS01280 (KX728_01280) amiA 237919..239898 (+) 1980 WP_215805068.1 peptide ABC transporter substrate-binding protein Regulator
  KX728_RS01285 (KX728_01285) amiC 239965..241461 (+) 1497 WP_215805067.1 ABC transporter permease Regulator
  KX728_RS01290 (KX728_01290) amiD 241461..242387 (+) 927 WP_007522372.1 oligopeptide ABC transporter permease OppC Regulator
  KX728_RS01295 (KX728_01295) amiE 242396..243463 (+) 1068 WP_215805066.1 ABC transporter ATP-binding protein Regulator
  KX728_RS01300 (KX728_01300) amiF 243474..244403 (+) 930 WP_001291306.1 ATP-binding cassette domain-containing protein Regulator
  KX728_RS01305 (KX728_01305) - 244493..245932 (-) 1440 WP_215805065.1 TrkH family potassium uptake protein -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 55741.16 Da        Isoelectric Point: 9.2425

>NTDB_id=588961 KX728_RS01285 WP_215805067.1 239965..241461(+) (amiC) [Streptococcus oralis strain 34]
MKKYIFMRVLRSLLSIFLVTTLTYTIIYTMVPRKLIFKQDTNYNKIATTPDKRDNYENTVYERMGYIEYYDTKELQERAS
SLDSSVTVDANDTNKAIYEKYINQLGNGWTLGVFSESGQFYATREIPIFERVFKFYSNLIDIDHPNKIQDPENPNLQRYL
RFENDPAIGWSLVGSGTKHKYLLYFNNQFPFVHQNFVNINLGDSYPTYANTPVLQVITQGQGQTKTSEVQFPMGKKTSSV
DIYSRTYKSPSQADAREVANYGKDDPYTATESNYQYPSMIASSAVAGLIGLIISYAIAIPLGSAMARHKNTWIDSFSTGA
LTFLLALPTIALVYIVRLIGSSIGLPDSFPILGAGDWRSYVLPAVILGLLGAPSTAIWIRRYMIDLQSQDFVRFARAKGL
SEKEISNKHIFKNAMVPLVSGIPGAVIGVIGGATLTETVFAFPGMGKMLIDSVKASNNSMVVGLVFIFTCISIFSLFVGD
IWMTMLDPRIKLTEKGGK

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=588961 KX728_RS01285 WP_215805067.1 239965..241461(+) (amiC) [Streptococcus oralis strain 34]
ATGAAGAAATATATTTTTATGCGTGTATTGCGTTCATTGTTGTCTATTTTCTTGGTGACAACATTGACCTACACAATTAT
CTATACGATGGTTCCTCGAAAATTGATTTTCAAGCAGGATACCAACTATAACAAGATTGCAACGACGCCGGACAAGCGGG
ATAATTATGAAAATACCGTTTATGAACGGATGGGCTATATCGAGTACTACGATACCAAAGAGTTGCAAGAAAGAGCGAGC
TCACTGGACTCATCTGTAACAGTGGATGCCAATGATACCAATAAGGCAATCTATGAAAAATACATCAACCAACTAGGAAA
TGGTTGGACACTCGGTGTGTTCTCAGAAAGTGGTCAATTCTATGCTACGCGTGAAATTCCAATTTTTGAACGTGTTTTCA
AATTCTATTCCAACTTGATTGATATTGATCATCCAAACAAGATTCAAGACCCTGAAAATCCAAACTTGCAACGTTATCTT
CGTTTTGAAAATGACCCTGCTATCGGTTGGTCATTGGTTGGTTCAGGTACAAAACATAAGTATCTTTTGTATTTCAACAA
TCAATTTCCATTTGTACACCAAAACTTTGTGAACATCAACTTGGGTGACTCTTACCCAACTTATGCAAACACACCAGTGC
TTCAAGTTATCACACAAGGTCAGGGACAAACTAAGACATCAGAAGTTCAATTCCCTATGGGTAAAAAGACTTCATCGGTA
GATATTTACTCTCGTACTTACAAATCTCCAAGTCAAGCAGACGCGCGTGAGGTAGCCAACTATGGTAAAGACGATCCATA
TACAGCTACAGAAAGCAATTACCAATACCCATCAATGATTGCAAGTTCAGCGGTTGCTGGTTTGATTGGTTTGATTATTT
CGTATGCGATTGCGATTCCACTTGGATCTGCTATGGCTCGCCACAAAAATACTTGGATTGACAGCTTCTCGACAGGTGCT
CTGACCTTCTTGCTTGCCCTTCCAACGATTGCCTTGGTTTATATCGTCCGCTTGATTGGATCATCAATTGGTCTGCCTGA
CTCATTCCCTATTTTGGGTGCTGGAGATTGGCGTTCTTATGTCTTACCAGCAGTCATTCTAGGTTTGTTGGGTGCGCCAA
GTACAGCTATCTGGATTCGTCGTTACATGATCGACTTGCAATCTCAGGACTTTGTACGTTTTGCTCGTGCCAAAGGTTTG
TCTGAAAAAGAAATTTCAAATAAACACATCTTTAAAAATGCCATGGTTCCTTTGGTTTCAGGTATTCCTGGTGCCGTAAT
CGGAGTTATTGGTGGTGCAACATTGACAGAAACAGTCTTCGCCTTCCCAGGTATGGGTAAAATGTTGATTGACTCTGTTA
AGGCATCAAACAACTCAATGGTAGTTGGTCTCGTCTTTATCTTTACATGTATTTCTATCTTCTCACTCTTTGTAGGAGAT
ATCTGGATGACCATGCTTGACCCACGTATTAAATTGACAGAGAAAGGAGGCAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(298-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

76.908

100

0.769
  amiC Streptococcus thermophilus LMG 18311

76.305

100

0.763
  amiC Streptococcus thermophilus LMD-9

76.104

100

0.761