Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   KX728_RS01300 Genome accession   NZ_CP079724
Coordinates   243474..244403 (+) Length   309 a.a.
NCBI ID   WP_001291306.1    Uniprot ID   -
Organism   Streptococcus oralis strain 34     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 238474..249403
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KX728_RS01285 (KX728_01285) amiC 239965..241461 (+) 1497 WP_215805067.1 ABC transporter permease Regulator
  KX728_RS01290 (KX728_01290) amiD 241461..242387 (+) 927 WP_007522372.1 oligopeptide ABC transporter permease OppC Regulator
  KX728_RS01295 (KX728_01295) amiE 242396..243463 (+) 1068 WP_215805066.1 ABC transporter ATP-binding protein Regulator
  KX728_RS01300 (KX728_01300) amiF 243474..244403 (+) 930 WP_001291306.1 ATP-binding cassette domain-containing protein Regulator
  KX728_RS01305 (KX728_01305) - 244493..245932 (-) 1440 WP_215805065.1 TrkH family potassium uptake protein -
  KX728_RS01310 (KX728_01310) trkA 245936..247285 (-) 1350 WP_215805064.1 Trk system potassium transporter TrkA -
  KX728_RS01315 (KX728_01315) - 247687..248190 (+) 504 WP_033629317.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  KX728_RS01320 (KX728_01320) - 248602..249165 (+) 564 WP_215805063.1 ECF transporter S component -

Sequence

Protein


Download         Length: 309 a.a.        Molecular weight: 35067.28 Da        Isoelectric Point: 7.0424

>NTDB_id=588964 KX728_RS01300 WP_001291306.1 243474..244403(+) (amiF) [Streptococcus oralis strain 34]
MSEKLVEIKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNNTSKGEIIFDGHKINGKKSHK
ESSDLIRRIQMIFQDPAASLNERATVDYIISEGLYNYHLFKDEEDRKEKVQKMIHEVGLLKEHLTRYPHEFSGGQRQRIG
IARALVMEPDFVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPVHPYTQALLSAVPIPDPILERKKVLKVYDPDQHDYETDKPSMVEIRPGHYVWANQAELARYKEALKK

Nucleotide


Download         Length: 930 bp        

>NTDB_id=588964 KX728_RS01300 WP_001291306.1 243474..244403(+) (amiF) [Streptococcus oralis strain 34]
ATGTCTGAAAAATTAGTAGAAATTAAAGATTTAGAAATTTCCTTCGGTGAAGGAAGTAAGAAGTTTGTCGCGGTTAAAAA
CGCCAACTTCTTTATCAACAAGGGAGAAACTTTCTCTCTTGTAGGTGAATCTGGTAGTGGGAAAACAACCATTGGTCGTG
CCATTATTGGTTTAAATAATACTAGTAAAGGTGAGATCATCTTTGATGGTCATAAGATTAATGGGAAAAAATCTCATAAA
GAATCATCAGACTTGATTCGTCGTATCCAGATGATTTTCCAGGACCCTGCAGCGAGCTTGAATGAGCGTGCAACAGTTGA
CTATATCATCTCTGAAGGTCTTTACAACTATCACTTGTTTAAAGATGAAGAAGATCGAAAAGAAAAAGTTCAAAAGATGA
TTCATGAAGTTGGACTTTTGAAAGAACACTTGACCCGCTATCCACATGAGTTTTCTGGTGGGCAACGCCAGCGTATCGGG
ATTGCCCGTGCCCTTGTGATGGAACCTGATTTCGTTATTGCGGATGAGCCAATTTCAGCCTTGGACGTATCAGTGCGTGC
GCAAGTCTTGAACTTGCTCAAGAAGTTCCAAAAAGAGTTGGGCTTGACCTATCTCTTTATCGCGCATGACTTGTCAGTTG
TTCGCTTTATCTCAGATCGTATCGCGGTTATCTATAAGGGAGTTATCGTCGAAGTGGCGGAGACAGAGGAGTTGTTTAAC
AATCCCGTCCACCCATACACTCAAGCACTTCTATCTGCTGTACCGATTCCAGATCCAATCTTGGAACGCAAGAAGGTCTT
GAAAGTTTACGATCCTGACCAACATGACTATGAGACAGACAAGCCATCTATGGTAGAAATTCGTCCAGGTCACTATGTTT
GGGCTAACCAAGCAGAACTTGCTCGTTACAAGGAAGCTCTTAAAAAATAA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(25-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus salivarius strain HSISS4

85.113

100

0.851
  amiF Streptococcus thermophilus LMG 18311

84.142

100

0.841
  amiF Streptococcus thermophilus LMD-9

83.819

100

0.838