Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   KX728_RS01290 Genome accession   NZ_CP079724
Coordinates   241461..242387 (+) Length   308 a.a.
NCBI ID   WP_007522372.1    Uniprot ID   A0A3R9I9B2
Organism   Streptococcus oralis strain 34     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 236461..247387
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KX728_RS01280 (KX728_01280) amiA 237919..239898 (+) 1980 WP_215805068.1 peptide ABC transporter substrate-binding protein Regulator
  KX728_RS01285 (KX728_01285) amiC 239965..241461 (+) 1497 WP_215805067.1 ABC transporter permease Regulator
  KX728_RS01290 (KX728_01290) amiD 241461..242387 (+) 927 WP_007522372.1 oligopeptide ABC transporter permease OppC Regulator
  KX728_RS01295 (KX728_01295) amiE 242396..243463 (+) 1068 WP_215805066.1 ABC transporter ATP-binding protein Regulator
  KX728_RS01300 (KX728_01300) amiF 243474..244403 (+) 930 WP_001291306.1 ATP-binding cassette domain-containing protein Regulator
  KX728_RS01305 (KX728_01305) - 244493..245932 (-) 1440 WP_215805065.1 TrkH family potassium uptake protein -
  KX728_RS01310 (KX728_01310) trkA 245936..247285 (-) 1350 WP_215805064.1 Trk system potassium transporter TrkA -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34633.66 Da        Isoelectric Point: 9.0162

>NTDB_id=588962 KX728_RS01290 WP_007522372.1 241461..242387(+) (amiD) [Streptococcus oralis strain 34]
MSTIDKEKFQFVKRDDFASETIDAPAYSYWGSVFRQFLKKKSTVIMLGILVAIILMSFIYPMFSDFDFNDVSKVNDFSAR
FIKPNAEHWFGTDSNGKSLFDGVWFGARNSILISVIATFINLVIGVIVGGIWGISKSVDRVMMEVYNIISNIPSLLIVIV
LTYSIGAGFWNLIFAMSVTTWIGIAYMIRIQIMRYRDLEYNLASQTLGTPTFKIIVKNIMPQLVSVIVSTMTLMLPSFIS
YEAFLSFFGLGLPVTVPSLGRLISDYSQNVTTNAYLFWIPLTTLILVSLSLFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=588962 KX728_RS01290 WP_007522372.1 241461..242387(+) (amiD) [Streptococcus oralis strain 34]
ATGTCAACAATCGATAAAGAAAAATTTCAGTTCGTAAAACGTGACGATTTTGCCTCTGAAACAATTGATGCTCCTGCCTA
TTCATACTGGGGTTCTGTATTTAGACAATTTCTAAAGAAAAAATCAACAGTCATTATGTTGGGGATTTTGGTTGCCATTA
TCTTGATGAGCTTTATTTACCCAATGTTCTCAGATTTTGACTTCAACGATGTAAGTAAGGTCAATGACTTTTCTGCTCGT
TTTATCAAGCCCAATGCTGAACATTGGTTTGGTACAGATAGCAATGGTAAATCCTTGTTTGATGGGGTTTGGTTTGGTGC
GCGTAATTCAATTCTTATCTCTGTAATTGCCACTTTTATCAACCTTGTGATCGGGGTTATTGTTGGTGGAATTTGGGGAA
TTTCAAAATCCGTTGACCGCGTCATGATGGAAGTTTATAACATTATTTCAAACATTCCATCTCTCTTGATTGTCATTGTC
TTGACTTACTCAATTGGTGCTGGTTTCTGGAATTTGATTTTTGCCATGAGTGTGACAACTTGGATTGGGATTGCTTATAT
GATTCGTATCCAAATCATGCGTTATCGTGATTTGGAATACAACCTTGCTTCTCAAACACTTGGAACACCAACCTTTAAAA
TCATTGTTAAAAATATCATGCCGCAATTGGTATCTGTTATTGTTTCTACAATGACCTTGATGTTGCCAAGCTTCATCTCT
TATGAAGCCTTCCTTTCCTTCTTTGGATTGGGATTGCCTGTAACAGTGCCAAGTTTGGGACGTTTGATCTCAGATTACTC
ACAAAACGTTACGACCAACGCTTACTTGTTCTGGATTCCATTGACTACCTTGATTTTGGTATCTCTATCTCTTTTTGTTG
TTGGTCAAAACCTAGCGGATGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterProScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-75)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(123-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

83.442

100

0.834
  amiD Streptococcus thermophilus LMG 18311

81.818

100

0.818
  amiD Streptococcus thermophilus LMD-9

81.818

100

0.818