Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   KX728_RS01280 Genome accession   NZ_CP079724
Coordinates   237919..239898 (+) Length   659 a.a.
NCBI ID   WP_215805068.1    Uniprot ID   -
Organism   Streptococcus oralis strain 34     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 232919..244898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KX728_RS01250 (KX728_01250) - 233341..233571 (+) 231 WP_008276638.1 DUF1146 family protein -
  KX728_RS01255 (KX728_01255) murA 233595..234878 (+) 1284 WP_215805070.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  KX728_RS01260 (KX728_01260) - 234865..235059 (+) 195 WP_000739701.1 DNA-directed RNA polymerase subunit beta -
  KX728_RS01265 (KX728_01265) endA 235100..235924 (+) 825 WP_215805069.1 DNA/RNA non-specific endonuclease Machinery gene
  KX728_RS01270 (KX728_01270) - 236069..237400 (+) 1332 WP_061421650.1 hemolysin family protein -
  KX728_RS01280 (KX728_01280) amiA 237919..239898 (+) 1980 WP_215805068.1 peptide ABC transporter substrate-binding protein Regulator
  KX728_RS01285 (KX728_01285) amiC 239965..241461 (+) 1497 WP_215805067.1 ABC transporter permease Regulator
  KX728_RS01290 (KX728_01290) amiD 241461..242387 (+) 927 WP_007522372.1 oligopeptide ABC transporter permease OppC Regulator
  KX728_RS01295 (KX728_01295) amiE 242396..243463 (+) 1068 WP_215805066.1 ABC transporter ATP-binding protein Regulator
  KX728_RS01300 (KX728_01300) amiF 243474..244403 (+) 930 WP_001291306.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 659 a.a.        Molecular weight: 72762.87 Da        Isoelectric Point: 4.7979

>NTDB_id=588960 KX728_RS01280 WP_215805068.1 237919..239898(+) (amiA) [Streptococcus oralis strain 34]
MKKSRVFVAAGVALLAAGVLAACGSSKSSDSTAPKNYGYVYTADPETLDYLISGKQSTKVATSNGIDGLFTNDKYGNLVP
AVAEDWSVSKDGLTYTYKIRKGVKWMTSDGEEYAEVKAKDFVNGLKHAADNKSEALYLAEDSVKGLADYKAGNNKDFSSV
GVKAVDDYTLEYTLNQPEPYWNSKMAYAIFWPLNEDFEKSKGADFAKATDPTSLLYNGPFLLKGLTAKSSIEFAKNENYW
DKDNVHIDKVTLAFYDGSDQESIERNFTSGAYSYARLYPTSSNYSKVEETYKDNIYYTPSGPGIGGLGVNIDRQGYKYTS
KTTDEEKTSTKKALLNKDFRQALNFAFDRTSYSAQINGKEGAPLAVRNLFVKPDFVSAGEKTFGDLVTEKMAAYGDEWKN
VNFADGQDGLFNADKAKAEFAKAKTALEAEGVKFPIHLDIPVDQTSKNYIARIQSFKQSVETVLGEGNVVIDIQQISKDE
LNNITYYAASAAAEDWDLSGAVGWNPDYEDPSTYLDILKTTNAEQTKTYMGYEGADNAAAAQVGLKEYDKLVDEAAKETN
DLNVRYEKYAAAQAWLTDSSLFLPAMSSSGAAPIISRVVPFTASYSQSGDKGSDVYFKYIQLQDKVVTKADYEQAREKWL
KEKKESNEKVQKELANHVK

Nucleotide


Download         Length: 1980 bp        

>NTDB_id=588960 KX728_RS01280 WP_215805068.1 237919..239898(+) (amiA) [Streptococcus oralis strain 34]
ATGAAAAAAAGTAGAGTATTTGTTGCAGCAGGTGTTGCTTTATTAGCAGCAGGAGTACTAGCTGCTTGCGGTTCTTCAAA
ATCATCTGATTCAACAGCGCCAAAAAATTATGGCTATGTTTATACAGCTGATCCAGAAACATTGGATTACCTCATTTCAG
GGAAACAAAGTACTAAGGTTGCCACTTCAAATGGTATCGATGGTCTCTTCACAAATGACAAGTATGGGAACCTAGTTCCT
GCAGTTGCAGAAGACTGGTCAGTTTCAAAAGATGGTTTGACTTATACCTATAAGATTCGTAAAGGTGTTAAATGGATGAC
ATCAGATGGCGAAGAATATGCTGAAGTGAAAGCGAAAGACTTTGTAAATGGCTTGAAACACGCGGCTGATAACAAGTCTG
AAGCACTTTATCTAGCAGAAGATTCAGTTAAAGGTCTAGCTGACTATAAAGCTGGAAATAATAAAGACTTTTCTTCAGTC
GGTGTAAAGGCAGTTGATGATTATACTCTTGAGTATACTTTGAATCAACCAGAACCATACTGGAACTCTAAGATGGCCTA
CGCAATCTTCTGGCCATTGAACGAAGATTTTGAAAAATCAAAAGGGGCTGACTTTGCCAAAGCAACTGACCCTACATCAT
TGCTTTACAATGGTCCATTCTTACTGAAAGGTTTGACTGCTAAATCTTCTATAGAGTTTGCTAAGAATGAAAACTACTGG
GACAAAGATAATGTTCACATTGATAAAGTAACCCTTGCTTTCTATGATGGGTCAGACCAAGAATCTATTGAACGTAACTT
TACAAGTGGAGCTTATAGCTATGCTCGTCTTTACCCAACAAGTTCAAACTACTCTAAGGTAGAAGAAACATACAAAGACA
ATATCTACTACACTCCATCAGGACCTGGTATTGGTGGTTTGGGTGTGAATATTGACCGTCAAGGTTACAAATACACTTCT
AAAACAACTGATGAAGAGAAGACTTCTACCAAGAAAGCCCTTCTTAACAAGGACTTCCGTCAGGCTTTGAACTTCGCCTT
TGACCGTACTTCTTACTCAGCACAAATTAATGGTAAAGAAGGTGCTCCTCTTGCAGTTCGTAACCTCTTTGTGAAACCAG
ATTTTGTCTCTGCAGGTGAAAAAACTTTCGGTGACTTGGTAACTGAAAAGATGGCTGCTTACGGTGATGAGTGGAAGAAT
GTTAACTTTGCGGATGGTCAAGATGGACTCTTCAACGCCGATAAAGCCAAAGCTGAATTTGCCAAAGCTAAAACAGCATT
GGAAGCAGAAGGTGTGAAATTCCCTATTCACTTGGATATCCCAGTAGACCAAACATCTAAAAACTATATTGCACGTATCC
AATCCTTCAAACAATCCGTTGAAACAGTACTTGGTGAAGGCAACGTAGTCATTGATATCCAACAAATTTCTAAAGATGAG
TTGAACAACATCACTTACTACGCAGCTAGCGCAGCAGCAGAAGATTGGGATCTTTCAGGTGCTGTTGGATGGAACCCTGA
CTATGAAGATCCATCAACTTACCTTGATATCTTGAAGACAACGAATGCTGAACAAACAAAAACATACATGGGTTACGAAG
GTGCAGATAATGCTGCAGCGGCTCAAGTTGGTTTGAAAGAATACGATAAGCTAGTTGATGAAGCTGCTAAGGAAACCAAC
GACTTGAATGTTCGTTATGAAAAATATGCGGCTGCCCAAGCTTGGTTGACAGATAGCTCACTCTTCTTGCCAGCTATGTC
ATCAAGTGGTGCTGCACCAATCATTTCTCGTGTTGTACCATTCACAGCATCTTACAGTCAATCTGGAGATAAGGGATCAG
ACGTATACTTCAAGTATATTCAGTTACAAGATAAGGTTGTAACAAAAGCTGACTATGAACAAGCTCGTGAAAAATGGCTC
AAAGAGAAAAAAGAATCAAACGAAAAAGTTCAAAAAGAATTGGCTAACCACGTTAAATAA

Domains

Predicted by InterProScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(78-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

68.285

100

0.683
  amiA3 Streptococcus thermophilus LMG 18311

67.576

100

0.677
  amiA3 Streptococcus thermophilus LMD-9

67.424

100

0.675