Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BRPE64_RS00880 Genome accession   NC_021287
Coordinates   186045..187598 (-) Length   517 a.a.
NCBI ID   WP_016344107.1    Uniprot ID   R4WF01
Organism   Caballeronia insecticola     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 181045..192598
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BRPE64_RS00865 (BRPE64_ACDS01820) - 182961..184295 (+) 1335 WP_016344104.1 sigma-54 dependent transcriptional regulator -
  BRPE64_RS00870 (BRPE64_ACDS01830) - 184378..184914 (-) 537 WP_044041033.1 peroxiredoxin -
  BRPE64_RS00875 (BRPE64_ACDS01840) - 185047..185676 (+) 630 WP_044041035.1 hypothetical protein -
  BRPE64_RS00880 (BRPE64_ACDS01850) comM 186045..187598 (-) 1554 WP_016344107.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  BRPE64_RS00885 (BRPE64_ACDS01860) - 187691..187954 (-) 264 WP_016344108.1 accessory factor UbiK family protein -
  BRPE64_RS00890 (BRPE64_ACDS01870) - 188398..188736 (+) 339 WP_016344109.1 P-II family nitrogen regulator -
  BRPE64_RS00895 (BRPE64_ACDS01880) - 188780..190261 (+) 1482 WP_016344110.1 ammonium transporter -
  BRPE64_RS00900 (BRPE64_ACDS01890) gshA 190612..191901 (+) 1290 WP_044041036.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 517 a.a.        Molecular weight: 54825.75 Da        Isoelectric Point: 7.3026

>NTDB_id=58850 BRPE64_RS00880 WP_016344107.1 186045..187598(-) (comM) [Caballeronia insecticola]
MSLAVVRSRAPAPGRAPEVVVEVHLANGLPSFSIVGLPDLEVRESRERVRAALQNCGFDFPVRRITVNLAPADLPKESGR
FDLPIALGILAASGQIPAESLANREFAGELSLTGALRPMRGAFAMVCGAARHHAAAGERGERDERAPEIYLPLASAAEAA
LVPGIDVFGAADLPALCAHLNGVPDARLRPVHAVTLPQTAAPAPDLADVIGHPAARRALEVAAAGGHHLLMIGPPGAGKS
MLAARLPSLLPPMSDDEALTSAAILSASSIGFTPEQWRRRPFRAPHHSSSSAALVGGRNPPQPGEITLAHHGVLFLDELP
EFDRKVLETLREPLEVGHITISRAAQQADFPAACQLIAAMNPCPCGWRGDPSGRCRCSPDIAARYLRKLSGPLMDRIDIQ
IELPALTPAELSARGAERGESSAVVAARVAAARDIQTQRQGKTNRELDGREADDVCRPDSAGEALLRAAGERFGWSARAY
YRVLKVVRTIADLADAKTPDVAHVAEAVQYRRMLSLA

Nucleotide


Download         Length: 1554 bp        

>NTDB_id=58850 BRPE64_RS00880 WP_016344107.1 186045..187598(-) (comM) [Caballeronia insecticola]
ATGTCGCTTGCCGTGGTACGCAGCCGCGCGCCCGCTCCTGGGCGCGCGCCCGAAGTCGTCGTCGAAGTCCATCTCGCTAA
CGGGCTGCCGTCTTTTTCCATCGTCGGCCTGCCCGATCTCGAAGTGCGCGAAAGCCGCGAGCGCGTGCGCGCCGCGCTGC
AGAACTGCGGCTTCGACTTTCCCGTCCGCAGAATCACCGTCAATCTCGCGCCCGCCGATTTGCCGAAGGAATCGGGGCGC
TTCGATCTGCCGATCGCGCTCGGCATTCTCGCCGCGAGCGGGCAAATCCCGGCCGAGTCGCTGGCGAATCGCGAATTCGC
GGGCGAGCTATCGCTCACCGGCGCGTTACGGCCGATGCGCGGCGCCTTCGCGATGGTGTGCGGCGCGGCGCGCCATCACG
CGGCGGCGGGCGAACGTGGCGAACGTGACGAACGCGCGCCGGAAATCTATCTGCCGCTTGCGAGCGCGGCGGAGGCGGCG
CTGGTGCCGGGCATCGACGTCTTCGGCGCGGCCGACCTGCCCGCGCTCTGCGCGCACCTGAACGGCGTGCCCGACGCGCG
CCTGCGGCCGGTGCACGCCGTGACGCTTCCGCAAACAGCCGCGCCCGCGCCCGATCTCGCCGACGTGATCGGTCATCCCG
CCGCGCGCCGCGCGCTCGAAGTGGCGGCGGCGGGCGGCCATCATTTGCTGATGATCGGCCCGCCCGGCGCGGGCAAATCG
ATGCTCGCGGCGCGCCTGCCGAGCCTCCTTCCGCCCATGAGCGACGACGAAGCGCTCACATCCGCCGCGATTCTTTCTGC
GAGTTCGATCGGCTTCACGCCGGAGCAATGGCGGCGGCGGCCGTTTCGCGCGCCGCATCACTCGTCGAGTTCGGCGGCGC
TGGTCGGCGGACGCAATCCGCCGCAGCCGGGCGAGATCACGCTCGCGCATCACGGCGTGCTGTTCCTCGACGAACTTCCC
GAATTCGACCGCAAGGTGCTCGAGACGCTGCGCGAACCGCTCGAAGTCGGGCACATCACGATTTCGCGCGCGGCGCAGCA
GGCGGACTTTCCCGCCGCATGTCAGCTGATCGCGGCGATGAATCCATGCCCGTGTGGCTGGCGCGGCGATCCGAGCGGGC
GTTGCCGCTGTTCGCCGGATATCGCCGCGCGCTATCTGCGCAAGTTGTCGGGACCGTTGATGGATCGCATCGACATTCAG
ATCGAGCTGCCGGCGCTGACGCCGGCGGAATTGTCCGCGCGCGGCGCCGAGCGAGGCGAGTCGAGCGCCGTGGTCGCGGC
GCGCGTCGCGGCGGCCCGCGACATTCAGACGCAGCGTCAAGGCAAGACCAACCGCGAACTCGATGGCCGCGAGGCCGACG
ACGTCTGCCGCCCCGATTCAGCCGGCGAGGCGTTGCTGCGCGCAGCCGGCGAGCGCTTCGGCTGGTCGGCGCGCGCCTAC
TACCGCGTACTCAAGGTGGTGCGAACGATCGCGGACCTCGCCGACGCCAAAACGCCCGACGTCGCTCATGTAGCCGAGGC
GGTGCAATATCGGCGGATGCTATCGCTTGCTTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(419-511)

Subunit ChlI of Mg-chelatase (ChlI)

(21-134)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(205-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB R4WF01

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

49.416

99.42

0.491
  comM Vibrio campbellii strain DS40M4

48.748

100

0.489
  comM Glaesserella parasuis strain SC1401

48.17

100

0.484
  comM Legionella pneumophila strain ERS1305867

47.059

100

0.48
  comM Legionella pneumophila str. Paris

47.059

100

0.48
  comM Haemophilus influenzae Rd KW20

47.784

100

0.48
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.195

98.066

0.424

Multiple sequence alignment