Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   KYE73_RS00470 Genome accession   NZ_CP079235
Coordinates   120064..121896 (+) Length   610 a.a.
NCBI ID   WP_226555208.1    Uniprot ID   -
Organism   Bifidobacterium pseudocatenulatum strain YIT11952     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 115064..126896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KYE73_RS00450 (KYE73_00450) thiS 115375..115569 (-) 195 WP_003833700.1 sulfur carrier protein ThiS -
  KYE73_RS00455 (KYE73_00455) - 116126..117178 (+) 1053 WP_022244788.1 aldo/keto reductase -
  KYE73_RS00460 (KYE73_00460) - 117295..117789 (+) 495 WP_022244787.1 MarR family winged helix-turn-helix transcriptional regulator -
  KYE73_RS00465 (KYE73_00465) - 118095..120062 (+) 1968 WP_404802245.1 ABC transporter ATP-binding protein -
  KYE73_RS00470 (KYE73_00470) rcrQ 120064..121896 (+) 1833 WP_226555208.1 ABC transporter ATP-binding protein Regulator
  KYE73_RS00475 (KYE73_00475) - 121982..122950 (-) 969 WP_226555210.1 FAD:protein FMN transferase -
  KYE73_RS00480 (KYE73_00480) - 123057..124463 (+) 1407 WP_404802246.1 MFS transporter -
  KYE73_RS00485 (KYE73_00485) - 124856..126619 (+) 1764 WP_404802250.1 FTR1 family protein -

Sequence

Protein


Download         Length: 610 a.a.        Molecular weight: 66725.23 Da        Isoelectric Point: 5.7926

>NTDB_id=588336 KYE73_RS00470 WP_226555208.1 120064..121896(+) (rcrQ) [Bifidobacterium pseudocatenulatum strain YIT11952]
MPGGPMGRGRRAAEKPQDFGGVMKKLMHFCRRYIPAIIVALVLGAIGTVCQIVGPDKLKDMTNEIAKGLPALVNGEPVLG
AIDMDAVTHIAWLLVALYVGYAVLCYVQSWMMANVTQRTAQELREAISVKINKLPLKYFDKVSYGDVLSRITNDVDAIGQ
TLGQSVGSLITSVTLFVGALVMMFYNNVIMTVCAIASSLVGLLIMGAIMKVSQKYFSRQQIALGDVNGHVEEMYAGHTVV
KAYCGEADSIRAFEKYNGDLYDSGWKSQFLSGLMMPLMNFVGNFGYVVVCVVGAVLAMDGKIEFGVIVAFMMYIRLFTQP
LSQFAQAFQNLQRCAAASERVFSFLEEPEMADESDKQALLGVNGKPVRGDVEFSHVKFGYDPSKTIINDFSASVKSGQKV
AIVGPTGAGKTTMVNLLMRFYEISGGSIAIDGVDTKSVPRWNVHDQFSMVLQDTWVFHGTVRENIAYSKPGVTDRQIEDA
CKAVGLHHYIMSLPNGYDTVLDDKATLSQGQKQLLTIARAMVEDAPILILDEATSSVDTRTEELIQKAMDALTVDRTSFV
IAHRLSTIRDADMILVMNHGDIVESGTHEELLAKGGFYADIYNSQFALTD

Nucleotide


Download         Length: 1833 bp        

>NTDB_id=588336 KYE73_RS00470 WP_226555208.1 120064..121896(+) (rcrQ) [Bifidobacterium pseudocatenulatum strain YIT11952]
ATGCCAGGAGGACCTATGGGACGCGGCCGCAGAGCCGCTGAAAAGCCGCAGGATTTCGGCGGTGTGATGAAGAAGCTGAT
GCATTTCTGTCGTCGCTACATTCCCGCCATCATTGTGGCGCTCGTATTGGGCGCGATCGGCACGGTATGCCAGATCGTCG
GCCCAGACAAGCTCAAGGACATGACCAACGAGATCGCCAAAGGCCTGCCTGCGCTGGTCAACGGCGAGCCGGTGCTCGGT
GCGATCGACATGGACGCGGTCACACACATCGCATGGCTGCTGGTGGCGCTGTATGTGGGGTACGCGGTGCTGTGCTACGT
GCAAAGCTGGATGATGGCGAACGTCACGCAGCGCACCGCACAGGAGCTGCGCGAAGCCATCAGCGTGAAGATCAACAAGC
TGCCGCTCAAGTATTTCGACAAGGTCAGCTATGGCGATGTGCTCAGCCGCATCACCAACGATGTGGACGCCATCGGCCAG
ACGCTCGGCCAGTCGGTCGGCTCGCTGATCACGTCGGTCACGCTGTTCGTGGGCGCGCTCGTCATGATGTTCTACAACAA
TGTGATCATGACGGTGTGCGCCATCGCTTCCAGCCTGGTTGGCCTGCTCATCATGGGCGCGATCATGAAGGTTTCGCAGA
AGTACTTCTCCCGTCAGCAGATCGCATTGGGCGATGTCAACGGTCACGTCGAAGAGATGTACGCCGGCCACACCGTGGTC
AAGGCGTATTGCGGCGAGGCTGATTCGATTCGCGCGTTCGAAAAGTACAACGGCGATTTGTACGATTCGGGATGGAAGAG
CCAGTTCCTTTCCGGCCTGATGATGCCGTTGATGAATTTCGTCGGCAATTTCGGCTACGTGGTTGTGTGCGTGGTTGGCG
CCGTGCTTGCGATGGATGGCAAGATCGAGTTTGGTGTGATCGTTGCGTTCATGATGTACATTCGACTGTTCACCCAGCCG
CTTTCCCAGTTCGCGCAGGCATTCCAGAACCTGCAGCGTTGCGCGGCCGCTTCCGAGCGCGTGTTCAGCTTCCTTGAAGA
GCCGGAGATGGCCGACGAATCCGACAAGCAGGCGCTGCTCGGCGTGAACGGCAAACCGGTGCGCGGTGACGTTGAGTTCA
GCCATGTGAAGTTCGGTTACGATCCGAGCAAGACGATCATCAACGATTTCTCCGCTTCGGTGAAGTCTGGCCAGAAGGTT
GCGATTGTTGGTCCGACCGGTGCCGGCAAGACCACGATGGTGAATCTGCTGATGCGTTTCTATGAGATTTCGGGCGGTTC
GATTGCGATTGATGGTGTGGATACGAAGTCCGTGCCACGCTGGAACGTGCATGACCAGTTCTCCATGGTATTGCAGGATA
CGTGGGTGTTCCATGGAACAGTGCGTGAAAACATCGCGTATTCGAAGCCGGGCGTCACCGACAGGCAGATCGAGGACGCA
TGCAAGGCCGTGGGTCTGCATCACTACATCATGTCGCTGCCGAATGGCTATGACACAGTGCTTGACGACAAGGCCACGCT
TTCGCAGGGTCAGAAGCAGTTGCTCACCATTGCGCGAGCCATGGTTGAGGATGCGCCGATTCTGATTCTCGACGAGGCCA
CCTCTTCGGTCGATACGCGTACGGAAGAGCTGATTCAGAAGGCCATGGACGCGCTGACCGTGGACCGTACGTCGTTCGTG
ATCGCGCATCGCCTGTCCACCATCCGCGATGCGGACATGATTTTGGTCATGAACCATGGCGACATTGTGGAAAGCGGTAC
GCATGAGGAGCTGCTCGCCAAAGGCGGTTTCTACGCCGACATCTACAACAGCCAGTTCGCCCTCACCGACTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(38-321)

ABC transporter (ABC_tran)

(388-535)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

53.333

95.902

0.511