NTDB

Overview

Name	ssb	Type	Machinery gene
Locus tag	KPF49_RS07960	Genome accession	NZ_CP079110
Coordinates	1538621..1539097 (-)	Length	158 a.a.
NCBI ID	WP_183672885.1	Uniprot ID	A0A9Q2CYW7
Organism	Nosocomiicoccus ampullae strain DSM 19163
Function	ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 1533621..1544097

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KPF49_RS07920 (KPF49_07920)	-	1533686..1534132 (-)	447	WP_183672877.1	hypothetical protein	-
KPF49_RS07925 (KPF49_07925)	-	1534317..1534889 (-)	573	WP_183672878.1	hypothetical protein	-
KPF49_RS07930 (KPF49_07930)	-	1534943..1535149 (-)	207	WP_183672879.1	helix-turn-helix domain-containing protein	-
KPF49_RS07935 (KPF49_07935)	-	1535289..1535759 (+)	471	WP_183672880.1	general stress protein	-
KPF49_RS07940 (KPF49_07940)	rpsR	1535808..1536047 (-)	240	WP_183672881.1	30S ribosomal protein S18	-
KPF49_RS07945 (KPF49_07945)	modB	1536179..1536844 (-)	666	WP_183672882.1	molybdate ABC transporter permease subunit	-
KPF49_RS07950 (KPF49_07950)	modA	1536852..1537604 (-)	753	WP_183672883.1	molybdate ABC transporter substrate-binding protein	-
KPF49_RS07955 (KPF49_07955)	modA	1537605..1538444 (-)	840	WP_183672884.1	molybdate ABC transporter substrate-binding protein	-
KPF49_RS07960 (KPF49_07960)	ssb	1538621..1539097 (-)	477	WP_183672885.1	single-stranded DNA-binding protein	Machinery gene
KPF49_RS07965 (KPF49_07965)	rpsF	1539122..1539430 (-)	309	WP_183672886.1	30S ribosomal protein S6	-
KPF49_RS07970 (KPF49_07970)	ychF	1539564..1540664 (-)	1101	WP_183672887.1	redox-regulated ATPase YchF	-
KPF49_RS07975 (KPF49_07975)	-	1540682..1540867 (-)	186	WP_183672888.1	DUF951 domain-containing protein	-
KPF49_RS07980 (KPF49_07980)	-	1540877..1541824 (-)	948	WP_183672889.1	mechanosensitive ion channel family protein	-
KPF49_RS07985 (KPF49_07985)	-	1541828..1542613 (-)	786	WP_183672890.1	ParB/RepB/Spo0J family partition protein	-
KPF49_RS07990 (KPF49_07990)	-	1542626..1543435 (-)	810	WP_183672891.1	ParB/RepB/Spo0J family partition protein	-

Sequence

Protein

Download Length: 158 a.a. Molecular weight: 17565.31 Da Isoelectric Point: 5.2880

                                >NTDB_id=587859 KPF49_RS07960 WP_183672885.1 1538621..1539097(-) (ssb) [Nosocomiicoccus ampullae strain DSM 19163]

MLNRVVLVGRLTRDPELRMSQSGIAVGNFNLAVNRPFTDRNGERGADFINCVVFRKQAENVKNFVQKGSLVGVDGRLQSR

SYENKEGQRVYVTEVVCDSVQFLEPKNRQGSGNQANHAAESYSEPYNSGNQSYGSREPENPFANSTGNVDISEDDLPF

Nucleotide

Download Length: 477 bp

                                >NTDB_id=587859 KPF49_RS07960 WP_183672885.1 1538621..1539097(-) (ssb) [Nosocomiicoccus ampullae strain DSM 19163]

ATGCTGAATCGTGTCGTTTTAGTTGGCCGTCTCACAAGAGACCCTGAGCTTCGTATGAGTCAAAGCGGTATTGCGGTTGG

TAATTTCAATTTAGCAGTGAATAGACCATTTACTGACAGAAACGGAGAGCGTGGTGCTGACTTTATTAACTGTGTTGTAT

TTAGAAAACAAGCAGAGAATGTCAAAAACTTCGTTCAAAAAGGTAGTCTAGTCGGTGTAGATGGTAGACTTCAATCACGT

AGCTATGAGAACAAAGAGGGCCAAAGAGTATATGTTACAGAAGTTGTTTGTGACAGTGTTCAGTTCTTAGAACCGAAAAA

TCGACAAGGCAGCGGTAATCAGGCAAATCATGCGGCAGAAAGTTATTCTGAACCGTATAACAGCGGAAATCAGTCATATG

GATCTCGTGAACCTGAGAATCCATTCGCGAACTCTACAGGTAATGTAGATATTAGTGAAGATGATTTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ssb	Latilactobacillus sakei subsp. sakei 23K	56.471	100	0.608
ssbA	Bacillus subtilis subsp. subtilis str. 168	55.233	100	0.601
ssbB	Bacillus subtilis subsp. subtilis str. 168	55.752	71.519	0.399
ssb	Neisseria meningitidis MC58	32.961	100	0.373
ssb	Neisseria gonorrhoeae MS11	32.961	100	0.373
ssb	Glaesserella parasuis strain SC1401	33.146	100	0.373

Detailed information NTG0587859