Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   KUD99_RS03070 Genome accession   NZ_CP078087
Coordinates   688004..690124 (+) Length   706 a.a.
NCBI ID   WP_125856642.1    Uniprot ID   -
Organism   Stutzerimonas stutzeri strain YWX-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 683004..695124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KUD99_RS03050 comM 685167..686231 (+) 1065 WP_045159370.1 pilus assembly protein PilM Machinery gene
  KUD99_RS03055 pilN 686231..686803 (+) 573 WP_048328488.1 type 4a pilus biogenesis protein PilN -
  KUD99_RS03060 pilO 686800..687426 (+) 627 WP_125851277.1 type 4a pilus biogenesis protein PilO -
  KUD99_RS03065 pilP 687423..687950 (+) 528 WP_045159373.1 type 4a pilus biogenesis lipoprotein PilP -
  KUD99_RS03070 pilQ 688004..690124 (+) 2121 WP_125856642.1 type IV pilus secretin PilQ Machinery gene
  KUD99_RS03075 aroK 690128..690673 (+) 546 WP_017244294.1 shikimate kinase AroK -
  KUD99_RS03080 aroB 690698..691801 (+) 1104 WP_125856641.1 3-dehydroquinate synthase -
  KUD99_RS03085 - 691812..693401 (+) 1590 WP_213919134.1 AAA family ATPase -

Sequence

Protein


Download         Length: 706 a.a.        Molecular weight: 75632.81 Da        Isoelectric Point: 4.7044

>NTDB_id=586632 KUD99_RS03070 WP_125856642.1 688004..690124(+) (pilQ) [Stutzerimonas stutzeri strain YWX-1]
MNTTLSRLGVSLLAAFISPALLAANLNALDVAALPGDRVELKLAFDEPVASPRGYTLDQPARIALDLPGVSNNLGAKNRE
LGVGNARSVTVVEAQGRTRLIVNLTALVPYSTRVDGNNLFVVLGESSGTTSPAAASAAVTAPIAKPAPVKPMAAGKAIDN
IDFRRGEDGAGNVVITLSDPSVGSTIEEQGGKIRVVFAKAELPEALRVRLDVQDFATPVKFVDSTAQAGGASIAIEPTGR
YDYLAYQTDNKLTISVKPLTEEEADKRKADRFAYSGEKLSLNFQDIDVRSVLQLIADFTDLNLVASDTVSGNITLRLQNV
PWDQALDLVLKTKGLDKRQVGNVLLVAPADEIAARERQELESQRQIAELAPLRREVVQVNYAKAADIARLFQSVTSNGAV
AEDRGSIAVDDRTNNIIAYQTQERLDELRRIVAQLDIPVRQVMIEARIVEANVGYDKALGVRWGGNYTNDNWGLYGKDGA
IGRDEDGGRYLLPGTDKVGNFTLEDALAPVPFVDLGVLNSTAGIGIGYVSDHGILDLQLSAMEKTGNGEVVSQPKVVTAD
KETAKILKGAEIPYQEASSSGATSTSFKEAALSLEVTPQITPDNRIIMEVKVTKDAPDFANALNGVPPINKNEVNAKVLV
TDGETIVIGGVFSNSQISSIEKVPFLGDVPFVGRLFRRDIVEDKKSELLVFLTPRILNYRAVAVGQ

Nucleotide


Download         Length: 2121 bp        

>NTDB_id=586632 KUD99_RS03070 WP_125856642.1 688004..690124(+) (pilQ) [Stutzerimonas stutzeri strain YWX-1]
ATGAACACTACCCTTTCTCGCCTGGGCGTATCTCTGCTGGCGGCATTTATTTCGCCAGCACTGCTGGCGGCCAATCTCAA
CGCCTTGGATGTGGCTGCTTTGCCGGGCGATCGGGTTGAGTTGAAACTGGCATTTGACGAGCCTGTCGCGTCACCTCGTG
GCTACACGCTGGATCAGCCTGCACGCATTGCCCTGGATCTTCCAGGCGTATCCAACAACCTGGGGGCCAAAAATCGGGAG
CTGGGCGTTGGTAATGCGCGCAGCGTAACGGTCGTCGAGGCTCAAGGGCGCACCCGGCTCATCGTCAATCTGACCGCGCT
TGTTCCGTATTCCACTCGAGTGGATGGGAACAATCTGTTTGTCGTGCTGGGAGAGAGCTCGGGGACGACCAGCCCTGCGG
CTGCATCCGCTGCGGTCACTGCTCCGATTGCCAAGCCTGCTCCGGTTAAGCCGATGGCGGCCGGCAAGGCGATCGACAAT
ATCGATTTTCGCCGCGGTGAAGATGGTGCCGGAAACGTGGTAATCACACTGTCCGATCCGTCGGTAGGTTCGACTATCGA
AGAGCAGGGAGGAAAGATCCGCGTTGTGTTCGCCAAGGCGGAGCTGCCTGAAGCACTGCGTGTTCGGCTCGACGTTCAGG
ATTTCGCTACGCCGGTGAAGTTTGTCGACTCGACCGCTCAGGCAGGTGGTGCCAGTATCGCCATCGAGCCTACTGGGCGA
TACGATTATCTCGCCTACCAGACAGACAATAAGCTGACCATCAGCGTAAAGCCTCTTACAGAAGAAGAGGCCGATAAGCG
CAAGGCAGACCGTTTCGCCTATTCCGGTGAAAAACTGTCGCTGAATTTCCAAGATATTGATGTTCGTTCCGTACTGCAGT
TGATCGCTGATTTTACTGACCTGAACTTGGTTGCCAGCGATACCGTCAGTGGCAATATCACCCTTCGTTTGCAGAATGTG
CCTTGGGATCAAGCGCTCGACCTGGTTTTGAAAACCAAGGGGCTGGATAAGCGGCAAGTCGGGAACGTGCTGCTCGTTGC
GCCAGCTGACGAAATCGCTGCGCGTGAACGCCAGGAACTCGAGTCGCAGCGGCAGATTGCCGAGCTTGCACCGTTGCGTC
GCGAGGTCGTGCAAGTCAACTATGCCAAGGCTGCGGACATTGCTCGCCTGTTCCAGTCAGTGACGAGCAACGGCGCCGTT
GCAGAGGATCGTGGCTCTATAGCGGTGGATGATCGCACCAATAACATCATCGCTTATCAAACGCAGGAGCGACTTGACGA
GCTGCGTCGCATAGTCGCTCAGCTCGACATTCCTGTGCGGCAAGTGATGATCGAGGCGCGCATCGTTGAGGCGAATGTGG
GCTACGATAAAGCGCTTGGGGTTCGTTGGGGCGGAAACTACACCAACGACAATTGGGGCTTGTATGGCAAGGACGGTGCC
ATCGGTCGTGATGAAGATGGCGGTCGATATCTTCTCCCAGGTACAGACAAAGTCGGCAATTTTACCCTGGAAGATGCGTT
GGCCCCGGTTCCATTTGTCGATCTAGGAGTGCTTAACAGCACCGCCGGTATTGGGATTGGCTATGTCTCGGACCATGGAA
TCCTAGACCTTCAATTGTCGGCTATGGAGAAAACCGGTAACGGTGAAGTCGTCTCCCAGCCAAAGGTGGTTACTGCGGAT
AAGGAAACGGCCAAAATCTTGAAAGGTGCGGAAATCCCCTACCAAGAAGCCAGTTCGAGTGGCGCAACGTCGACATCTTT
CAAGGAGGCAGCCCTGTCGCTTGAGGTGACGCCGCAGATCACGCCGGACAACCGCATTATCATGGAGGTCAAGGTCACCA
AGGATGCCCCTGATTTTGCTAACGCTCTGAATGGCGTGCCGCCGATCAACAAGAACGAAGTCAACGCCAAAGTTCTTGTT
ACCGATGGAGAAACAATCGTCATCGGTGGTGTATTCTCCAATAGCCAGATCAGCAGCATTGAAAAAGTGCCGTTCCTGGG
TGACGTTCCGTTCGTTGGTCGCCTCTTCCGACGGGACATCGTGGAAGATAAAAAATCCGAGCTTCTGGTCTTCTTGACCC
CTAGAATCCTCAACTATCGAGCGGTCGCCGTGGGCCAGTAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(302-348)

AMIN domain (AMIN)

(38-123)

Bacterial type II and III secretion system protein (Secretin)

(541-697)

Bacterial type II/III secretion system short domain (Secretin_N)

(375-441)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

74.409

100

0.758
  pilQ Acinetobacter baumannii strain A118

41.094

100

0.415
  pilQ Acinetobacter baumannii D1279779

41.094

100

0.415
  comQ Acinetobacter baylyi ADP1

41.954

98.584

0.414
  pilQ Legionella pneumophila strain ERS1305867

37.5

96.317

0.361