Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   KUD99_RS03050 Genome accession   NZ_CP078087
Coordinates   685167..686231 (+) Length   354 a.a.
NCBI ID   WP_045159370.1    Uniprot ID   A0AA42PD57
Organism   Stutzerimonas stutzeri strain YWX-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 680167..691231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KUD99_RS03040 - 681232..682434 (-) 1203 WP_079761896.1 ISL3 family transposase -
  KUD99_RS03045 - 682564..684987 (-) 2424 WP_125856643.1 penicillin-binding protein 1A -
  KUD99_RS03050 comM 685167..686231 (+) 1065 WP_045159370.1 pilus assembly protein PilM Machinery gene
  KUD99_RS03055 pilN 686231..686803 (+) 573 WP_048328488.1 type 4a pilus biogenesis protein PilN -
  KUD99_RS03060 pilO 686800..687426 (+) 627 WP_125851277.1 type 4a pilus biogenesis protein PilO -
  KUD99_RS03065 pilP 687423..687950 (+) 528 WP_045159373.1 type 4a pilus biogenesis lipoprotein PilP -
  KUD99_RS03070 pilQ 688004..690124 (+) 2121 WP_125856642.1 type IV pilus secretin PilQ Machinery gene
  KUD99_RS03075 aroK 690128..690673 (+) 546 WP_017244294.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 37730.25 Da        Isoelectric Point: 4.6880

>NTDB_id=586631 KUD99_RS03050 WP_045159370.1 685167..686231(+) (comM) [Stutzerimonas stutzeri strain YWX-1]
MLGLFTKKANTLLGIDISSTSVKLLELSRSGNRYRVEAYAVEPLPPNAVVEKNIAELEGVGQALQRVVAKAKTGCKSAVV
AVSGSAVITKMIEMDAGLSDEELENQLKIEADQYIPYPLEEVAIDFEVQGPAPRAPGRVEVLLAACRKENVEIREAALAL
AGLTAKVVDVEAYALERSYGLLASQLGTGHGELTVAVVDIGATMTTLSVLHNGRTIYTREQLFGGRQLTEEIQRRYGLSQ
EEAGLAKKQGGLPDDYDSEVLLPFKEAVVQQVSRSLQFFFAAGQFHDVDCILLAGGTASIPGLDHMIQQKIGTQTLVANP
FADMALSGKVNAGALASDAPALMIACGLALRSFD

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=586631 KUD99_RS03050 WP_045159370.1 685167..686231(+) (comM) [Stutzerimonas stutzeri strain YWX-1]
GTGCTAGGGCTCTTCACTAAGAAAGCGAACACGCTGCTTGGGATCGATATCAGTTCGACCTCAGTCAAGCTCCTCGAATT
AAGTCGATCGGGTAATCGGTACCGCGTCGAGGCTTATGCCGTCGAGCCGCTGCCACCGAATGCCGTCGTCGAAAAGAACA
TCGCCGAACTTGAGGGTGTCGGTCAGGCCCTGCAGCGAGTCGTTGCCAAGGCCAAGACCGGCTGCAAGTCCGCTGTTGTC
GCTGTCTCCGGGTCTGCCGTCATCACAAAGATGATTGAGATGGATGCTGGGCTTTCTGATGAAGAGCTCGAGAACCAGCT
CAAGATCGAGGCAGATCAGTACATCCCCTACCCACTGGAGGAAGTCGCGATCGACTTCGAGGTGCAAGGTCCTGCGCCTC
GCGCGCCTGGCAGGGTAGAGGTTCTCCTCGCCGCTTGCCGTAAAGAGAATGTCGAGATCCGTGAAGCCGCGCTGGCCTTG
GCCGGGCTTACCGCCAAAGTGGTGGATGTCGAGGCCTATGCGCTTGAGCGCTCCTACGGATTGCTCGCTTCACAATTGGG
TACGGGGCACGGCGAGCTGACCGTTGCCGTCGTCGACATCGGTGCGACCATGACAACCCTGAGCGTGCTGCATAACGGTC
GTACCATCTACACGCGCGAGCAGCTGTTCGGTGGTCGTCAACTGACCGAAGAGATCCAGCGCCGCTACGGTCTGTCTCAG
GAAGAAGCCGGCCTTGCCAAGAAGCAAGGTGGTCTCCCAGATGACTACGACAGTGAAGTCCTGCTTCCGTTCAAGGAGGC
GGTGGTGCAGCAGGTATCCCGCTCGTTGCAGTTCTTCTTCGCTGCAGGGCAGTTCCACGACGTCGACTGCATCCTGCTCG
CGGGCGGGACGGCCTCCATTCCGGGTCTCGATCACATGATCCAGCAAAAGATCGGAACGCAAACTCTAGTGGCTAATCCC
TTCGCCGATATGGCATTGAGCGGCAAGGTGAACGCCGGGGCGCTGGCCAGTGATGCGCCTGCATTAATGATTGCATGCGG
TTTGGCGCTGAGGAGCTTTGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

55.932

100

0.559
  pilM Acinetobacter baumannii D1279779

55.932

100

0.559
  comM Acinetobacter baylyi ADP1

53.39

100

0.534
  pilM Legionella pneumophila strain ERS1305867

46.328

100

0.463