Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicR   Type   Regulator
Locus tag   KVP03_RS05550 Genome accession   NZ_CP077959
Coordinates   1154060..1154770 (+) Length   236 a.a.
NCBI ID   WP_012677635.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain SEZ_14-145     
Function   repress comCDE expression; repress comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1149060..1159770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KVP03_RS05525 (KVP03_05505) - 1149615..1149764 (+) 150 Protein_1039 aquaporin family protein -
  KVP03_RS05530 (KVP03_05510) - 1149895..1150434 (+) 540 WP_230922954.1 hypothetical protein -
  KVP03_RS05535 (KVP03_05515) - 1150431..1151546 (+) 1116 WP_230922955.1 acetyl-CoA C-acyltransferase -
  KVP03_RS05540 (KVP03_05520) - 1151536..1152798 (+) 1263 WP_230922956.1 AMP-binding protein -
  KVP03_RS05545 (KVP03_05525) - 1152844..1153863 (+) 1020 WP_230922957.1 DUF3114 domain-containing protein -
  KVP03_RS05550 (KVP03_05530) vicR 1154060..1154770 (+) 711 WP_012677635.1 response regulator YycF Regulator
  KVP03_RS05555 (KVP03_05535) vicK 1154763..1156115 (+) 1353 WP_014623188.1 cell wall metabolism sensor histidine kinase VicK Regulator
  KVP03_RS05560 (KVP03_05540) vicX 1156119..1156928 (+) 810 WP_021320992.1 MBL fold metallo-hydrolase Regulator
  KVP03_RS05565 (KVP03_05545) - 1157808..1159322 (+) 1515 WP_230922958.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 26967.81 Da        Isoelectric Point: 4.9038

>NTDB_id=585659 KVP03_RS05550 WP_012677635.1 1154060..1154770(+) (vicR) [Streptococcus equi subsp. zooepidemicus strain SEZ_14-145]
MKKILIVDDEKPISDIIKFNLTKEGYDTVTAFDGKEAVAVFEEEKPDLIILDLMLPELDGLEVAKEIRKTSHIPIIMLSA
KDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTETIETAVAEENASSGSQELTIGNLQILPDAFIAKKHGQEVE
LTHREFELLHHLANHIGQVMTREHLLETVWGYDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYMKAYD

Nucleotide


Download         Length: 711 bp        

>NTDB_id=585659 KVP03_RS05550 WP_012677635.1 1154060..1154770(+) (vicR) [Streptococcus equi subsp. zooepidemicus strain SEZ_14-145]
ATGAAGAAAATACTGATTGTTGATGATGAAAAGCCGATTTCTGATATCATTAAATTTAATCTGACAAAGGAAGGCTATGA
TACGGTCACAGCATTTGATGGCAAAGAGGCCGTTGCAGTCTTTGAAGAGGAAAAGCCAGATTTGATTATTTTGGATTTGA
TGCTTCCTGAATTAGATGGCCTTGAGGTAGCCAAGGAAATCCGCAAGACCAGCCATATTCCTATCATCATGCTATCTGCT
AAGGATAGCGAATTTGATAAGGTGATTGGACTTGAAATAGGGGCTGATGATTATGTGACTAAGCCCTTTTCAAATCGTGA
GCTGCTGGCGCGTGTCAAGGCACATTTGCGTCGGACAGAGACTATTGAGACAGCAGTAGCCGAAGAAAATGCCTCCTCAG
GCTCTCAGGAGCTGACCATCGGCAATCTACAGATTTTACCAGATGCCTTTATCGCTAAAAAGCATGGTCAAGAGGTTGAG
CTGACCCATCGTGAATTTGAATTGCTGCATCACCTGGCAAACCATATTGGACAGGTCATGACACGTGAGCATTTGCTTGA
GACCGTATGGGGCTATGATTATTTTGGCGATGTCCGAACCGTTGACGTTACTGTCCGTCGCCTGCGTGAAAAAATAGAGG
ACACACCGAGTCGTCCGGAGTACATCTTGACAAGACGTGGTGTTGGGTACTACATGAAGGCTTATGACTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-113)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(156-231)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicR Streptococcus mutans UA159

89.407

100

0.894
  micA Streptococcus pneumoniae Cp1015

78.541

98.729

0.775
  covR Lactococcus lactis subsp. lactis strain DGCC12653

44.397

98.305

0.436
  covR Streptococcus salivarius strain HSISS4

43.966

98.305

0.432
  scnR Streptococcus mutans UA159

37.607

99.153

0.373