Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   KU540_RS12070 Genome accession   NZ_CP077894
Coordinates   2425409..2425879 (-) Length   156 a.a.
NCBI ID   WP_000934781.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 329     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2420409..2430879
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KU540_RS12005 (KU540_11940) - 2420778..2420924 (-) 147 WP_000989998.1 hypothetical protein -
  KU540_RS12010 (KU540_11945) - 2420925..2421287 (-) 363 WP_000383792.1 hypothetical protein -
  KU540_RS12015 (KU540_11950) rinB 2421288..2421461 (-) 174 WP_000595254.1 transcriptional activator RinB -
  KU540_RS12020 (KU540_11955) - 2421458..2421664 (-) 207 WP_111187501.1 DUF1381 domain-containing protein -
  KU540_RS12025 (KU540_11960) - 2421701..2422237 (-) 537 WP_225806018.1 dUTPase -
  KU540_RS12030 (KU540_11965) - 2422230..2422478 (-) 249 WP_225806017.1 DUF1024 family protein -
  KU540_RS12035 (KU540_11970) - 2422471..2422821 (-) 351 WP_141228648.1 hypothetical protein -
  KU540_RS12040 (KU540_11975) - 2422818..2423165 (-) 348 WP_000982696.1 YopX family protein -
  KU540_RS12045 (KU540_11980) - 2423230..2423472 (-) 243 WP_000131384.1 SAV1978 family virulence-associated passenger protein -
  KU540_RS12050 (KU540_11985) - 2423476..2423844 (-) 369 WP_225806016.1 SA1788 family PVL leukocidin-associated protein -
  KU540_RS12055 (KU540_11990) - 2423857..2424261 (-) 405 WP_000401960.1 RusA family crossover junction endodeoxyribonuclease -
  KU540_RS12060 (KU540_11995) - 2424270..2424488 (-) 219 WP_225806015.1 hypothetical protein -
  KU540_RS12065 (KU540_12000) - 2424495..2425379 (-) 885 WP_000148309.1 DnaD domain protein -
  KU540_RS12070 (KU540_12005) ssbA 2425409..2425879 (-) 471 WP_000934781.1 single-stranded DNA-binding protein Machinery gene
  KU540_RS12075 (KU540_12010) - 2425880..2426497 (-) 618 WP_071621397.1 MBL fold metallo-hydrolase -
  KU540_RS12080 (KU540_12015) - 2426578..2427498 (-) 921 WP_000138479.1 recombinase RecT -
  KU540_RS12085 (KU540_12020) - 2427500..2429443 (-) 1944 WP_000700563.1 AAA family ATPase -
  KU540_RS12090 (KU540_12025) - 2429452..2429715 (-) 264 WP_001205732.1 hypothetical protein -
  KU540_RS12095 (KU540_12030) - 2429724..2429984 (-) 261 WP_000291080.1 DUF1108 family protein -
  KU540_RS12100 (KU540_12035) - 2430078..2430239 (-) 162 WP_000066020.1 DUF1270 domain-containing protein -
  KU540_RS12105 (KU540_12040) - 2430232..2430453 (-) 222 WP_000594792.1 hypothetical protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17602.28 Da        Isoelectric Point: 4.6229

>NTDB_id=584713 KU540_RS12070 WP_000934781.1 2425409..2425879(-) (ssbA) [Staphylococcus aureus strain 329]
MLNRTVLVGRLTKDPEYRTTLNGVSVTTFTIAVNRTFTNAQGEREADFINCVTFRKQAENVNNYLSKGSLAGVDGRLQSR
SYENKDGQRVFVTEVAADSVQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANDPIEIDDDDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=584713 KU540_RS12070 WP_000934781.1 2425409..2425879(-) (ssbA) [Staphylococcus aureus strain 329]
ATGTTAAACAGAACAGTATTAGTAGGACGCTTAACAAAAGATCCAGAATATAGAACAACGCTGAATGGTGTGAGTGTTAC
CACTTTCACTATCGCAGTTAACAGAACATTTACTAACGCTCAAGGAGAACGTGAGGCAGACTTTATTAACTGTGTAACTT
TTAGAAAACAAGCAGAAAATGTAAATAATTATTTATCCAAAGGGTCATTGGCTGGCGTTGATGGACGTTTACAATCACGC
AGTTATGAAAACAAAGACGGGCAACGTGTATTTGTTACAGAAGTAGCAGCGGACAGTGTTCAATTCTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCGAATGATCCTATTGAAATAGATGACGATGATTTACCATTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.887

100

0.679
  ssb Latilactobacillus sakei subsp. sakei 23K

51.176

100

0.558
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

67.949

0.397
  ssb Neisseria meningitidis MC58

33.526

100

0.372
  ssb Neisseria gonorrhoeae MS11

33.526

100

0.372
  ssb Glaesserella parasuis strain SC1401

32.203

100

0.365