Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   I872_RS06140 Genome accession   NC_021175
Coordinates   1229420..1231396 (-) Length   658 a.a.
NCBI ID   WP_015605272.1    Uniprot ID   A0A512AC25
Organism   Streptococcus cristatus AS 1.3089     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1224420..1236396
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I872_RS06120 (I872_06105) amiF 1224919..1225845 (-) 927 WP_015605268.1 ATP-binding cassette domain-containing protein Regulator
  I872_RS06125 (I872_06110) amiE 1225856..1226923 (-) 1068 WP_015605269.1 ABC transporter ATP-binding protein Regulator
  I872_RS06130 (I872_06115) amiD 1226932..1227858 (-) 927 WP_015605270.1 oligopeptide ABC transporter permease OppC Regulator
  I872_RS06135 (I872_06120) amiC 1227858..1229354 (-) 1497 WP_015605271.1 ABC transporter permease Regulator
  I872_RS06140 (I872_06125) amiA3 1229420..1231396 (-) 1977 WP_015605272.1 peptide ABC transporter substrate-binding protein Regulator
  I872_RS06145 (I872_06130) - 1231537..1233291 (-) 1755 WP_015605273.1 glycerophosphoryl diester phosphodiesterase membrane domain-containing protein -
  I872_RS06150 (I872_06135) - 1233565..1234059 (-) 495 WP_015605274.1 DUF536 domain-containing protein -
  I872_RS06155 (I872_06140) - 1234174..1234902 (-) 729 WP_015605275.1 pseudouridine synthase -
  I872_RS06160 (I872_06145) - 1234912..1236063 (-) 1152 WP_015605276.1 MFS transporter -

Sequence

Protein


Download         Length: 658 a.a.        Molecular weight: 72624.68 Da        Isoelectric Point: 4.7459

>NTDB_id=58459 I872_RS06140 WP_015605272.1 1229420..1231396(-) (amiA3) [Streptococcus cristatus AS 1.3089]
MKKSKVLALAGVSLLSVGVLAACSSSSKGKSEATSYNYVYSADPETLDYVTSGKASTADFVTNGVDGLLENDQYGNFVPS
MAESWTVSKDGLTYTYKIRKDAKWYTSEGEEYGDVTAQDFVTGLKHAADKKSQALYLVQQSVKGLDDYVNGKITDFSTVG
VKAVDDHTLQYTLNQPEPQWNSKTTSQVLWPINAEFLKKQGDKFGQSTDPTSILYNGPFLMKSITAKSAVEYQKNENYWD
KENVHIDTIKLAYFDGQDQDALARNFKDEAYTVARLYPTSSNYAGIEKDFKDNIFFTPPSAGVAVMGVNIDRQSYNHTSK
TTDAQKSSTKKAILNKDFRQALNFAIDRTSYSAQINGEEGAPYAVRNTYVPPSFVQVGEKSFGDVVEEKVAALGEEWKGV
QLEDGQDGLFNAEKAKAEFAKAKAALQAEGVEFPIHLDLPVAQTSKPMVNRAQSLKQSVEKTLGAENVVVDIQQMSEDDL
YNITYYAPNAAAEDWDISTAVGWNPDYQDPSTYLDILKTTSTETTKTYLGFEGADNAAAKQVGLDEFDRLVNEAGKETSD
VVTRYEKYAAAQAWLTDNSLVVPLMANPGAAPFISRIEPFSGAYAQTGNKTSSTYFKRLKVTNDVVTKKDYEAARKKWLK
EKEESNAKAQKDLESHVE

Nucleotide


Download         Length: 1977 bp        

>NTDB_id=58459 I872_RS06140 WP_015605272.1 1229420..1231396(-) (amiA3) [Streptococcus cristatus AS 1.3089]
ATGAAAAAAAGCAAAGTATTGGCTTTGGCTGGAGTTAGTCTTCTTTCAGTAGGTGTTTTAGCTGCTTGTTCTAGCTCATC
AAAAGGCAAAAGCGAAGCAACATCTTACAACTATGTTTATAGTGCTGATCCAGAAACATTGGATTATGTAACATCTGGTA
AAGCTTCAACAGCTGATTTTGTGACAAATGGTGTAGATGGTTTGTTGGAAAATGACCAATATGGTAATTTTGTACCATCA
ATGGCAGAGTCTTGGACTGTCTCTAAAGACGGCTTGACTTACACCTACAAAATCCGTAAAGATGCCAAATGGTACACTTC
AGAAGGTGAAGAATATGGTGATGTGACTGCTCAGGACTTTGTAACTGGTCTTAAGCATGCAGCTGATAAAAAATCACAAG
CTCTTTACCTTGTGCAACAATCTGTGAAAGGTTTGGATGACTATGTAAATGGTAAAATAACCGATTTCTCTACTGTTGGA
GTTAAAGCAGTTGACGACCATACTCTTCAATACACTCTTAACCAACCTGAGCCACAGTGGAATTCAAAAACAACTTCACA
AGTCCTGTGGCCAATCAATGCAGAATTCCTTAAGAAACAAGGGGATAAATTCGGTCAATCTACTGATCCAACTTCTATCC
TTTACAATGGACCATTCTTGATGAAATCTATCACAGCTAAATCTGCTGTAGAGTACCAAAAGAATGAAAACTACTGGGAC
AAGGAAAATGTCCACATCGATACAATTAAGTTGGCTTACTTTGATGGACAAGACCAAGATGCTCTTGCTCGTAACTTCAA
AGATGAGGCTTATACGGTAGCTCGTCTCTACCCTACAAGCTCAAACTATGCTGGTATCGAAAAAGATTTCAAGGATAACA
TTTTCTTCACACCACCAAGTGCCGGTGTAGCCGTTATGGGTGTCAATATCGACCGCCAAAGCTACAATCATACAAGCAAA
ACAACAGATGCTCAAAAGTCTTCTACTAAGAAAGCCATTCTTAACAAAGACTTCCGTCAAGCCTTGAACTTTGCTATCGA
CCGTACATCATACTCAGCACAAATCAATGGTGAAGAGGGCGCTCCTTATGCTGTCCGCAACACTTATGTGCCACCTTCAT
TTGTTCAAGTCGGTGAAAAATCTTTCGGTGACGTTGTAGAAGAAAAAGTTGCAGCCTTGGGTGAAGAGTGGAAAGGTGTT
CAACTTGAGGACGGTCAAGATGGTCTCTTTAATGCTGAGAAAGCAAAAGCAGAGTTTGCAAAAGCAAAAGCAGCCCTACA
AGCTGAGGGAGTAGAATTCCCAATCCATCTGGATCTTCCAGTTGCTCAGACTTCTAAGCCAATGGTTAACCGTGCGCAAT
CACTTAAGCAATCTGTTGAAAAGACTTTGGGAGCTGAGAATGTTGTTGTAGATATCCAACAAATGTCAGAAGATGATCTT
TACAACATTACTTACTATGCACCAAATGCCGCTGCTGAAGATTGGGATATCTCAACAGCTGTTGGTTGGAACCCTGACTA
TCAAGATCCATCAACTTATTTGGATATTTTGAAAACTACATCAACTGAAACTACAAAGACTTACCTTGGGTTTGAGGGAG
CAGACAATGCTGCCGCTAAGCAAGTTGGTTTAGATGAATTTGACCGCTTGGTAAATGAAGCTGGTAAGGAAACTTCAGAT
GTTGTTACTCGCTACGAAAAATATGCAGCAGCTCAGGCTTGGTTGACTGACAACTCTCTTGTTGTTCCATTGATGGCAAA
TCCTGGTGCAGCACCATTTATCTCACGTATCGAGCCATTCTCAGGTGCTTATGCCCAAACTGGTAATAAGACAAGTTCTA
CTTACTTCAAACGTCTTAAAGTTACAAATGACGTAGTAACGAAGAAAGACTACGAAGCAGCTCGTAAGAAATGGCTGAAA
GAAAAAGAAGAGTCAAATGCGAAAGCACAAAAAGATCTCGAAAGTCATGTAGAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A512AC25

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

66.313

100

0.664
  amiA3 Streptococcus thermophilus LMG 18311

65.857

100

0.66
  amiA Streptococcus salivarius strain HSISS4

65.046

100

0.65

Multiple sequence alignment