Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   I872_RS06120 Genome accession   NC_021175
Coordinates   1224919..1225845 (-) Length   308 a.a.
NCBI ID   WP_015605268.1    Uniprot ID   A0A512AC41
Organism   Streptococcus cristatus AS 1.3089     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1219919..1230845
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I872_RS06105 (I872_06090) liaF 1220719..1221414 (-) 696 WP_015605265.1 cell wall-active antibiotics response protein LiaF -
  I872_RS06110 (I872_06095) - 1221637..1222452 (-) 816 WP_015605266.1 endonuclease/exonuclease/phosphatase family protein -
  I872_RS06115 (I872_06100) - 1222470..1224659 (-) 2190 WP_041826811.1 PTS transporter subunit IIBC -
  I872_RS06120 (I872_06105) amiF 1224919..1225845 (-) 927 WP_015605268.1 ATP-binding cassette domain-containing protein Regulator
  I872_RS06125 (I872_06110) amiE 1225856..1226923 (-) 1068 WP_015605269.1 ABC transporter ATP-binding protein Regulator
  I872_RS06130 (I872_06115) amiD 1226932..1227858 (-) 927 WP_015605270.1 oligopeptide ABC transporter permease OppC Regulator
  I872_RS06135 (I872_06120) amiC 1227858..1229354 (-) 1497 WP_015605271.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34888.89 Da        Isoelectric Point: 5.7081

>NTDB_id=58455 I872_RS06120 WP_015605268.1 1224919..1225845(-) (amiF) [Streptococcus cristatus AS 1.3089]
MTEKLVEIKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSAGDILYEGKKINGKQSKA
DEAELIRKIQMIFQDPAASLNERATVDYIISEGLYNYHLFENEEDRQEKVKNIIREVGLLAEHLTRYPHEFSGGQRQRIG
IARALVMEPDFVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPIHPYTQSLLSAVPIPDPILERKKVLKVYDPEQHDYSVDQPSMIEIRPGHYVWANKAEADRYKKEYK

Nucleotide


Download         Length: 927 bp        

>NTDB_id=58455 I872_RS06120 WP_015605268.1 1224919..1225845(-) (amiF) [Streptococcus cristatus AS 1.3089]
ATGACTGAAAAATTAGTTGAGATTAAAGATTTAGAAATTTCCTTCGGCGAAGGAAGTAAGAAGTTTGTAGCTGTAAAAAA
TGCGAATTTCTTTATCAATAAAGGAGAAACTTTTTCCCTTGTAGGTGAGTCTGGTTCTGGTAAAACAACCATCGGCCGTG
CTATCATCGGCTTGAATGATACTAGTGCAGGTGACATCTTATACGAAGGCAAAAAAATCAACGGGAAGCAATCTAAAGCT
GATGAGGCTGAATTGATTCGGAAGATTCAGATGATTTTCCAAGACCCAGCAGCCAGCTTGAATGAGCGTGCTACGGTTGA
CTATATCATTTCAGAAGGTCTTTATAACTACCATCTTTTTGAAAATGAAGAAGATCGTCAGGAAAAAGTTAAGAATATCA
TTCGTGAAGTGGGTCTCTTGGCTGAGCATTTGACACGCTATCCTCACGAATTTTCTGGTGGTCAACGTCAGCGGATTGGG
ATTGCTCGTGCCTTGGTAATGGAGCCAGATTTCGTCATTGCGGATGAGCCAATCTCTGCCTTGGACGTGTCTGTCCGGGC
GCAAGTCTTGAACCTTTTGAAAAAATTCCAAAAAGAACTTGGTTTGACCTATCTCTTTATCGCCCACGACCTATCGGTAG
TTCGCTTTATTTCAGATCGAATTGCTGTTATCTACAAAGGTGTTATCGTTGAGGTTGCAGAGACAGAAGAGTTGTTTAAC
AACCCGATCCACCCTTATACGCAGTCGCTATTGTCTGCTGTGCCGATTCCAGACCCAATTCTGGAACGCAAAAAGGTCTT
AAAGGTTTACGATCCAGAGCAGCATGACTACTCAGTGGATCAACCTAGTATGATTGAGATTCGTCCAGGACACTATGTCT
GGGCTAATAAGGCAGAAGCGGACCGTTATAAAAAAGAATATAAATAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(25-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A512AC41

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus salivarius strain HSISS4

84.641

99.351

0.841
  amiF Streptococcus thermophilus LMG 18311

83.987

99.351

0.834
  amiF Streptococcus thermophilus LMD-9

83.66

99.351

0.831

Multiple sequence alignment