Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   I872_RS06130 Genome accession   NC_021175
Coordinates   1226932..1227858 (-) Length   308 a.a.
NCBI ID   WP_015605270.1    Uniprot ID   -
Organism   Streptococcus cristatus AS 1.3089     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1221932..1232858
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I872_RS06115 (I872_06100) - 1222470..1224659 (-) 2190 WP_041826811.1 PTS transporter subunit IIBC -
  I872_RS06120 (I872_06105) amiF 1224919..1225845 (-) 927 WP_015605268.1 ATP-binding cassette domain-containing protein Regulator
  I872_RS06125 (I872_06110) amiE 1225856..1226923 (-) 1068 WP_015605269.1 ABC transporter ATP-binding protein Regulator
  I872_RS06130 (I872_06115) amiD 1226932..1227858 (-) 927 WP_015605270.1 oligopeptide ABC transporter permease OppC Regulator
  I872_RS06135 (I872_06120) amiC 1227858..1229354 (-) 1497 WP_015605271.1 ABC transporter permease Regulator
  I872_RS06140 (I872_06125) amiA3 1229420..1231396 (-) 1977 WP_015605272.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34664.75 Da        Isoelectric Point: 9.8870

>NTDB_id=58457 I872_RS06130 WP_015605270.1 1226932..1227858(-) (amiD) [Streptococcus cristatus AS 1.3089]
MATIDKSKFQFVKRDDFASETIDAPAYSYWRSVIRQFLKKKSTTIMLGILIAIVLMSFIYPMFSKFDFNDVSKVNDFSMR
YIKPNAEHWFGTDSNGKSLFDGVWFGARNSILISIIATVINLIIGIIVGAIWGISKAVDRVMMEVYNIISNIPSLLIVIV
LTYSIGAGFWNLIFAMTITGWVGIAYTIRIQIMRYRDLEYNLASRTLGTPTLKIVTKNIMPQLVSVIVTTTSQMLPSFIS
YEAFLSFFGLGLPVTVPSLGRLISDYSQNVTTNAYLFWIPLTTLILVSLSFFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=58457 I872_RS06130 WP_015605270.1 1226932..1227858(-) (amiD) [Streptococcus cristatus AS 1.3089]
ATGGCTACAATTGATAAAAGTAAATTCCAATTTGTCAAACGTGACGATTTTGCCTCTGAAACGATTGATGCTCCAGCCTA
TTCATACTGGCGCTCCGTTATACGTCAATTCTTGAAAAAGAAGTCAACGACTATCATGTTAGGGATTCTAATTGCCATCG
TGTTGATGAGTTTCATTTATCCCATGTTCTCGAAATTTGATTTCAATGATGTCAGCAAGGTAAATGACTTTAGCATGCGT
TATATCAAACCCAATGCTGAGCACTGGTTTGGTACAGATAGCAATGGTAAGTCTTTGTTTGACGGTGTGTGGTTTGGTGC
GCGGAATTCTATCCTGATTTCCATTATTGCAACAGTCATTAACTTGATTATCGGAATTATTGTCGGTGCTATCTGGGGGA
TTTCCAAAGCGGTTGATCGTGTCATGATGGAAGTCTATAATATCATTTCAAATATTCCATCCCTCTTGATTGTCATTGTC
TTGACCTACTCTATCGGTGCAGGTTTCTGGAACTTGATATTTGCCATGACCATCACTGGCTGGGTAGGGATTGCTTATAC
AATTCGTATTCAGATTATGCGTTACCGTGATTTGGAGTATAATTTGGCTTCTCGTACTTTGGGAACACCAACTCTTAAAA
TTGTTACCAAGAATATCATGCCACAGTTGGTGTCAGTTATCGTGACCACGACTTCTCAAATGCTTCCAAGCTTTATCTCT
TACGAGGCCTTTCTGTCTTTCTTTGGGCTTGGTCTTCCTGTGACAGTACCAAGTTTGGGACGCTTGATTTCTGACTATTC
ACAAAACGTAACTACCAACGCTTACCTTTTCTGGATTCCATTGACAACCTTGATCTTGGTATCCCTGTCCTTCTTCGTAG
TTGGTCAAAACTTAGCCGATGCAAGTGATCCACGGACACATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

85.714

100

0.857
  amiD Streptococcus thermophilus LMG 18311

84.416

100

0.844
  amiD Streptococcus thermophilus LMD-9

84.416

100

0.844

Multiple sequence alignment