Detailed information    

insolico Bioinformatically predicted

Overview


Name   stkP   Type   Regulator
Locus tag   MU520_RS08060 Genome accession   NZ_CP095463
Coordinates   1644638..1646632 (-) Length   664 a.a.
NCBI ID   WP_011921992.1    Uniprot ID   -
Organism   Streptococcus suis strain TJS56     
Function   require for competence development; phosphorylate ComE (predicted from homology)   
Competence regulation

Genomic Context


Location: 1639638..1651632
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MU520_RS08035 - 1640073..1640444 (-) 372 WP_011921997.1 S1 RNA-binding domain-containing protein -
  MU520_RS08040 - 1640446..1641846 (-) 1401 WP_011921996.1 Cof-type HAD-IIB family hydrolase -
  MU520_RS08045 vraR 1641896..1642537 (-) 642 WP_002937025.1 response regulator transcription factor Regulator
  MU520_RS08050 - 1642509..1643525 (-) 1017 WP_002937028.1 sensor histidine kinase -
  MU520_RS08055 liaF 1643522..1644181 (-) 660 WP_223375661.1 cell wall-active antibiotics response protein LiaF -
  MU520_RS08060 stkP 1644638..1646632 (-) 1995 WP_011921992.1 Stk1 family PASTA domain-containing Ser/Thr kinase Regulator
  MU520_RS08065 - 1646632..1647369 (-) 738 WP_012774983.1 Stp1/IreP family PP2C-type Ser/Thr phosphatase -
  MU520_RS08070 rsmB 1647407..1648720 (-) 1314 WP_011921990.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  MU520_RS08075 fmt 1648707..1649645 (-) 939 WP_011921989.1 methionyl-tRNA formyltransferase -

Sequence


Protein


Download         Length: 664 a.a.        Molecular weight: 71256.79 Da        Isoelectric Point: 6.5350

>NTDB_id=583040 MU520_RS08060 WP_011921992.1 1644638..1646632(-) (stkP) [Streptococcus suis strain TJS56]
MIQIGKIFAGRYRIVRQIGRGGMADVYLARDLILDGEEVAVKVLRTNYQTDQIAIQRFQREARAMAELDHPNIVRISDIG
EEDGQQYLAMEYVNGLDLKRYIKENAPLSNDVAVRIMGQILLAMRMAHTRGIVHRDLKPQNVLLTSNGVAKVTDFGIAVA
FAETSLTQTNSMLGSVHYLSPEQARGSKATIQSDIYAMGIILFEMLTGRIPYDGDSAVTIALQHFQKPLPSVREENANVP
QALENVVLKATAKKLNERYKSVAEMYADLASALSMDRQNEPRVELEGNKVDTKTLPKLSQANVETKVPHTNSSAQVSATD
KGSGKKEVAKSGNKPVSKPRPGIRTRYKVLIGAILLTVIAAGLMFFNTPRTVTVPDVSGQTVEKATEMIEVAGLEVGNIT
EEATATVDEGLVIRTSPAAKTTRRQGSKIDIVVATAALASIPDVVDKESDTARQELEALGFQVTIKEEYSEKVAQGLVIK
TDPGANSSAEKGAKITLYVSKGVAPQVVPNVVGKSQENATQILQTAGFSIGTITQEYSSSVTAGQVISTDPVANTELAKG
SIINLVISKGKELIMPDLTSGNYTYSQARSQLQALGVNAESIEKQEDRSYYSTTSDIVIGQYPAAGATIDGTVTLYVSVA
STRTSSDSSAGSSTSTSTSTGSGQ

Nucleotide


Download         Length: 1995 bp        

>NTDB_id=583040 MU520_RS08060 WP_011921992.1 1644638..1646632(-) (stkP) [Streptococcus suis strain TJS56]
ATGATTCAAATCGGTAAGATCTTTGCCGGTCGGTATCGAATCGTTCGGCAAATTGGTCGAGGCGGTATGGCAGATGTTTA
CCTAGCAAGAGATTTGATTTTAGATGGAGAAGAGGTTGCTGTTAAAGTTCTTCGGACCAACTATCAGACAGATCAAATTG
CTATCCAGCGTTTTCAACGTGAAGCGCGTGCCATGGCAGAACTTGACCATCCCAATATCGTTCGTATTTCGGACATCGGT
GAAGAAGATGGTCAACAGTATCTGGCTATGGAATATGTCAATGGCCTCGATTTAAAACGTTATATAAAAGAAAATGCACC
ACTTTCCAACGATGTTGCGGTGCGAATTATGGGACAGATTCTCCTTGCTATGCGCATGGCGCACACGAGAGGAATTGTCC
ATCGAGATTTGAAACCTCAGAACGTCCTTTTGACTTCCAATGGAGTCGCTAAAGTAACAGACTTTGGTATTGCAGTTGCC
TTTGCTGAAACGAGTTTGACACAAACCAACTCCATGTTGGGTTCTGTTCACTATCTTTCACCTGAGCAGGCGCGTGGTTC
GAAAGCGACCATTCAAAGTGATATTTATGCGATGGGAATCATCCTTTTTGAAATGTTGACGGGTCGCATTCCCTATGATG
GAGACAGTGCTGTGACGATCGCTCTTCAGCATTTCCAAAAACCTCTCCCATCTGTTAGAGAAGAGAATGCCAACGTACCT
CAGGCCTTAGAAAATGTTGTACTAAAAGCAACGGCAAAAAAATTAAACGAGCGCTATAAGTCGGTTGCAGAAATGTATGC
AGATTTAGCTTCGGCTCTATCCATGGATCGTCAGAATGAACCCAGGGTTGAACTAGAAGGGAACAAGGTTGATACAAAAA
CCTTGCCGAAACTCTCCCAAGCCAATGTTGAAACGAAAGTACCGCATACAAACAGTTCTGCTCAAGTTTCTGCGACGGAT
AAGGGGTCTGGTAAGAAAGAAGTGGCGAAGTCGGGAAATAAGCCTGTTTCAAAACCAAGGCCAGGCATACGTACACGCTA
CAAAGTCTTGATAGGAGCTATTTTGTTAACAGTCATAGCGGCTGGACTCATGTTTTTCAACACTCCACGAACAGTTACAG
TCCCTGATGTATCTGGTCAAACCGTTGAAAAAGCTACAGAAATGATTGAAGTGGCAGGATTGGAAGTTGGAAATATCACA
GAAGAAGCGACAGCGACTGTAGATGAAGGCTTGGTAATACGGACCTCTCCGGCTGCAAAGACGACCAGACGTCAAGGGAG
TAAGATTGATATTGTAGTAGCAACGGCTGCGCTGGCATCTATTCCAGATGTGGTGGATAAGGAGTCTGATACTGCGCGGC
AGGAATTGGAGGCCCTTGGTTTCCAAGTGACAATAAAAGAAGAATATAGCGAAAAAGTTGCCCAAGGACTCGTTATCAAA
ACAGATCCAGGAGCAAATAGTTCTGCTGAGAAGGGTGCAAAAATTACCCTTTACGTTTCCAAAGGAGTGGCGCCACAAGT
TGTTCCAAACGTTGTTGGAAAAAGTCAGGAGAATGCTACTCAAATTCTTCAGACAGCAGGCTTCAGCATTGGAACCATTA
CTCAGGAATATAGCTCATCTGTTACTGCAGGTCAGGTTATCAGCACAGATCCCGTTGCCAATACAGAGTTGGCAAAAGGT
TCTATCATCAATCTAGTTATTTCAAAAGGAAAAGAATTGATTATGCCTGATTTAACATCTGGCAATTACACCTATTCACA
GGCGCGTAGTCAATTACAAGCCTTGGGTGTCAATGCGGAAAGTATTGAAAAACAAGAAGATAGAAGCTATTATTCAACGA
CAAGTGACATCGTCATTGGACAATATCCTGCTGCTGGAGCAACAATTGATGGAACAGTTACCTTGTATGTCTCTGTTGCA
TCAACCAGAACCAGTAGCGATTCTTCAGCAGGAAGTTCCACAAGTACAAGTACTTCAACAGGTAGCGGACAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  stkP Streptococcus pneumoniae TIGR4

52.18

100

0.523

  stkP Streptococcus pneumoniae D39

52.18

100

0.523

  stkP Streptococcus pneumoniae R6

52.18

100

0.523

  stkP Streptococcus pneumoniae Rx1

52.03

100

0.521

  stkP/pknB Streptococcus salivarius strain HSISS4

51.171

90.06

0.461

  pknB Streptococcus mutans UA159

54.529

81.476

0.444