Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   MP619_RS01080 Genome accession   NZ_CP095081
Coordinates   172017..172409 (+) Length   130 a.a.
NCBI ID   WP_343237803.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain WJ001     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 167017..177409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MP619_RS01045 (MP619_01040) - 167122..168987 (+) 1866 WP_155782999.1 DUF859 family phage minor structural protein -
  MP619_RS01050 (MP619_01045) - 169039..169467 (+) 429 WP_268227804.1 DUF1366 domain-containing protein -
  MP619_RS01055 (MP619_01050) - 169433..169660 (+) 228 WP_037588167.1 hypothetical protein -
  MP619_RS01060 (MP619_01055) - 169668..170135 (+) 468 WP_155783054.1 phage holin family protein -
  MP619_RS01065 (MP619_01060) - 170128..170460 (+) 333 WP_155782998.1 phage holin -
  MP619_RS01070 (MP619_01065) - 170438..171667 (+) 1230 WP_155782997.1 N-acetylmuramoyl-L-alanine amidase -
  MP619_RS01075 (MP619_01070) prx 171811..172002 (+) 192 WP_155778416.1 hypothetical protein Regulator
  MP619_RS01080 (MP619_01075) comGD 172017..172409 (+) 393 WP_343237803.1 competence type IV pilus minor pilin ComGD Machinery gene
  MP619_RS01085 (MP619_01080) comGE 172366..172662 (+) 297 WP_129555186.1 competence type IV pilus minor pilin ComGE Machinery gene
  MP619_RS01090 (MP619_01085) comGF 172643..173083 (+) 441 WP_129555187.1 competence type IV pilus minor pilin ComGF Machinery gene
  MP619_RS01095 (MP619_01090) comGG 173106..173435 (+) 330 WP_231112812.1 competence type IV pilus minor pilin ComGG -
  MP619_RS01100 (MP619_01095) comGH 173498..174451 (+) 954 WP_129555189.1 class I SAM-dependent methyltransferase Machinery gene
  MP619_RS01105 (MP619_01100) - 174510..175706 (+) 1197 WP_129555190.1 acetate kinase -
  MP619_RS01110 (MP619_01105) - 176012..176219 (+) 208 Protein_171 helix-turn-helix transcriptional regulator -
  MP619_RS01115 (MP619_01110) - 176322..177002 (+) 681 WP_268227805.1 type II CAAX endopeptidase family protein -

Sequence

Protein


Download         Length: 130 a.a.        Molecular weight: 15030.21 Da        Isoelectric Point: 8.8870

>NTDB_id=581802 MP619_RS01080 WP_343237803.1 172017..172409(+) (comGD) [Streptococcus dysgalactiae strain WJ001]
MIESLLTLSVTSFIVLGLSMPVTSSYRRVQEQLFFTRFEHFYRHQQKLAILEHDQRVLTISSKQMLAAEESLTIPDSIRV
KNCQQLVIDQMGGNHSLAKIIFETTDQRVTYQFYLGSGNYQKTSQSLHRS

Nucleotide


Download         Length: 393 bp        

>NTDB_id=581802 MP619_RS01080 WP_343237803.1 172017..172409(+) (comGD) [Streptococcus dysgalactiae strain WJ001]
TTGATTGAAAGCTTATTAACGCTATCAGTAACAAGTTTTATTGTCTTGGGGTTATCTATGCCTGTGACAAGTAGTTATCG
AAGGGTCCAGGAACAGCTTTTTTTCACTCGTTTTGAGCACTTTTATCGTCACCAACAAAAGTTGGCTATTTTGGAACATG
ATCAACGAGTTTTGACAATTTCTTCGAAACAAATGCTAGCGGCAGAGGAGTCGTTAACAATACCTGACTCGATAAGAGTT
AAGAATTGCCAGCAATTGGTTATTGATCAAATGGGAGGAAATCATTCTTTAGCAAAGATAATATTCGAGACGACTGATCA
ACGGGTAACTTATCAATTTTATCTAGGGAGTGGAAATTATCAAAAAACAAGTCAAAGCTTACATCGCTCTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Streptococcus mutans UA140

44.355

95.385

0.423
  comGD Streptococcus mutans UA159

44.355

95.385

0.423
  comGD Streptococcus gordonii str. Challis substr. CH1

41.129

95.385

0.392
  comGD/cglD Streptococcus mitis NCTC 12261

37.302

96.923

0.362