Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   KS242_RS00755 Genome accession   NZ_CP077639
Coordinates   144039..145415 (+) Length   458 a.a.
NCBI ID   WP_217322597.1    Uniprot ID   -
Organism   Terribacillus sp. DMT04     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 139039..150415
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KS242_RS00735 (KS242_00735) - 139371..139829 (+) 459 WP_077304012.1 CtsR family transcriptional regulator -
  KS242_RS00740 (KS242_00740) - 139851..140381 (+) 531 WP_217322594.1 UvrB/UvrC motif-containing protein -
  KS242_RS00745 (KS242_00745) - 140381..141448 (+) 1068 WP_217322595.1 protein arginine kinase -
  KS242_RS00750 (KS242_00750) clpC 141471..143900 (+) 2430 WP_217322596.1 ATP-dependent protease ATP-binding subunit ClpC -
  KS242_RS00755 (KS242_00755) radA 144039..145415 (+) 1377 WP_217322597.1 DNA repair protein RadA Machinery gene
  KS242_RS00760 (KS242_00760) - 145589..146698 (+) 1110 WP_217322598.1 PIN/TRAM domain-containing protein -
  KS242_RS00765 (KS242_00765) ispD 146791..147468 (+) 678 WP_217322599.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  KS242_RS00770 (KS242_00770) ispF 147484..147960 (+) 477 WP_217322600.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  KS242_RS00775 (KS242_00775) gltX 147986..149455 (+) 1470 WP_217322601.1 glutamate--tRNA ligase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49763.05 Da        Isoelectric Point: 7.7995

>NTDB_id=581801 KS242_RS00755 WP_217322597.1 144039..145415(+) (radA) [Terribacillus sp. DMT04]
MAKRKTKYVCQECGYESAKWMGKCPSCGNWNTFTEEVVTPAGGGAFRHSAASSTAAKPQSITAIHSEKEPRVTTNLPEFN
RVLGGGIVPGSLVLVGGDPGIGKSTLLLQVSAQLAEKELRVLYISGEESARQTKLRADRLGVKADELYVLSETNLQDIVR
HIEEIKPAFVVVDSIQTVYREEVTSAPGSVSQVRESTSELMRVAKTNGIPIFLVGHVTKEGAIAGPRLLEHMVDAVLYFE
GERHHTFRILRSVKNRFGSTNEMGIFEMKEEGLREVTNPSEIFLEERSQGAAGSTVVASMEGTRPVLVEIQALISPTSFG
NPRRMATGTDHNRVPLLMAVLEKRVGLMLQNQDAYVKVAGGMRLDEPAIDLAVAASIASSFKDKPTKPDDVMIGEVGLTG
EVRRVSRIEQRVQEAAKLGFKRAIVPKKNLDGWTTPSGIKVVGVNSVSEALRIVLGED

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=581801 KS242_RS00755 WP_217322597.1 144039..145415(+) (radA) [Terribacillus sp. DMT04]
TTGGCAAAACGTAAGACAAAGTATGTATGTCAGGAATGTGGATATGAATCAGCGAAATGGATGGGTAAATGTCCGAGCTG
CGGGAATTGGAATACATTTACCGAGGAAGTTGTAACTCCAGCGGGCGGCGGTGCATTTCGGCATTCCGCTGCGTCATCTA
CAGCGGCAAAGCCGCAATCTATTACAGCAATTCATTCCGAAAAGGAACCGCGAGTTACGACAAACTTGCCGGAATTTAAC
CGGGTCCTTGGAGGCGGAATTGTTCCAGGGTCACTTGTGTTAGTCGGCGGAGATCCTGGTATCGGAAAATCCACATTGCT
TCTGCAAGTGAGTGCACAGCTGGCGGAGAAGGAATTGCGTGTTCTGTATATATCGGGTGAGGAATCGGCTCGCCAGACGA
AGCTGCGGGCCGATCGGCTTGGGGTGAAGGCGGATGAGCTGTATGTTCTGTCTGAGACAAACCTTCAGGATATTGTTCGG
CATATTGAGGAGATAAAGCCTGCTTTCGTTGTTGTCGATTCTATCCAAACGGTGTATCGAGAAGAAGTGACAAGTGCACC
GGGAAGTGTGTCTCAAGTGCGGGAATCAACGAGTGAGCTGATGCGCGTCGCGAAAACGAACGGTATACCAATCTTTCTTG
TTGGCCATGTGACCAAGGAAGGTGCTATTGCAGGTCCGAGACTGCTAGAGCATATGGTAGATGCAGTACTTTACTTCGAA
GGAGAGCGTCACCATACATTCCGGATATTGCGCAGTGTAAAAAACAGGTTTGGAAGCACGAATGAAATGGGTATCTTCGA
GATGAAAGAAGAGGGCCTTCGTGAAGTTACGAATCCTTCTGAGATCTTCTTAGAAGAGCGGTCGCAAGGAGCGGCGGGTT
CTACTGTTGTAGCATCGATGGAAGGAACGCGACCTGTCCTTGTTGAGATTCAGGCACTCATCTCACCTACTAGTTTTGGT
AACCCTCGCCGAATGGCTACCGGTACCGATCATAACCGTGTGCCATTGCTAATGGCGGTGCTTGAGAAGCGGGTTGGTCT
TATGCTTCAAAATCAAGATGCTTATGTGAAAGTTGCCGGCGGAATGCGTCTGGATGAACCTGCTATTGATTTAGCTGTGG
CGGCGAGCATTGCATCCAGTTTTAAGGACAAGCCAACTAAGCCGGATGATGTAATGATTGGAGAAGTAGGTTTGACTGGA
GAGGTTAGGCGTGTTTCCCGAATTGAACAGCGTGTGCAAGAAGCAGCTAAGCTTGGGTTTAAGCGTGCTATAGTGCCTAA
GAAGAATTTGGATGGCTGGACAACACCGTCAGGGATTAAAGTTGTCGGTGTGAACTCTGTAAGTGAAGCATTGCGAATTG
TCCTGGGAGAGGATTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(72-221)

Subunit ChlI of Mg-chelatase (ChlI)

(355-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

74.51

100

0.747
  radA Streptococcus pneumoniae Rx1

61.538

99.345

0.611
  radA Streptococcus pneumoniae D39

61.538

99.345

0.611
  radA Streptococcus pneumoniae R6

61.538

99.345

0.611
  radA Streptococcus pneumoniae TIGR4

61.538

99.345

0.611
  radA Streptococcus mitis NCTC 12261

61.538

99.345

0.611
  radA Streptococcus mitis SK321

61.538

99.345

0.611