Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   JGX27_RS11280 Genome accession   NZ_CP077423
Coordinates   2255689..2256954 (+) Length   421 a.a.
NCBI ID   WP_013643604.1    Uniprot ID   -
Organism   Streptococcus gallolyticus subsp. gallolyticus TX20005     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 2250689..2261954
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGX27_RS11255 (JGX27_11255) - 2251652..2254246 (+) 2595 WP_009855219.1 YfhO family protein -
  JGX27_RS11275 (JGX27_11275) rlmH 2254999..2255478 (-) 480 WP_009855220.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  JGX27_RS11280 (JGX27_11280) htrA 2255689..2256954 (+) 1266 WP_013643604.1 trypsin-like peptidase domain-containing protein Regulator
  JGX27_RS11285 (JGX27_11285) spo0J 2257024..2257800 (+) 777 WP_009855222.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence


Protein


Download         Length: 421 a.a.        Molecular weight: 43832.63 Da        Isoelectric Point: 4.0940

>NTDB_id=581535 JGX27_RS11280 WP_013643604.1 2255689..2256954(+) (htrA) [Streptococcus gallolyticus subsp. gallolyticus TX20005]
MKKIKLPKLPKLPKFNYKNWLKPLGVILVGFIAGIAGTILVLNMAGISITNVSGSSTKTTTSSVSYSNSNDTTKAVEKVQ
DAVVSVINYKSDSSSSTSDLYNQMFGNDSDSSSDSSSTDDLTVYSEGSGVIYKKDGDSAYVVTNNHVIDGAEQIEIMLAD
GTKVVGELVGADTYSDIAVVKISSDNVSTVAEFADSDKLTVGETAIAIGSPLGTEYANSVTQGIVSSLSRTVTMTNDDGE
TISTNAIQTDAAINPGNSGGALINIEGQVIGINSSKISSTSSSGESVEGMGFAIPSNDVVSIINQLEENGQVIRPALGIS
MVNLSDLSTNAIAQLNIPTSVTSGVVVAAVQSGMPAEGNLEQYDVITAIDDQEVTSTSDLQSILYTHSVGDSVKVTFYRG
TDKKTATIELTKTTQDLSSSN

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=581535 JGX27_RS11280 WP_013643604.1 2255689..2256954(+) (htrA) [Streptococcus gallolyticus subsp. gallolyticus TX20005]
GTGAAAAAAATAAAATTACCAAAATTACCCAAGTTGCCAAAATTTAATTACAAAAATTGGTTAAAACCATTGGGTGTCAT
TTTAGTCGGCTTTATAGCTGGTATCGCAGGTACAATACTCGTCCTAAATATGGCAGGTATTTCAATCACTAACGTCAGTG
GTTCAAGTACAAAAACAACAACAAGTAGCGTAAGCTATTCTAACTCTAACGATACAACAAAAGCTGTGGAAAAAGTTCAA
GACGCAGTTGTATCTGTTATTAACTACAAATCAGACTCGTCGTCTTCTACAAGTGACCTCTACAATCAAATGTTTGGCAA
TGATTCAGACAGTAGTAGCGATTCAAGCTCTACGGATGATTTGACCGTTTACAGTGAAGGTTCTGGGGTTATTTACAAAA
AAGATGGTGATTCTGCTTATGTCGTCACTAACAATCACGTTATTGATGGGGCCGAACAAATTGAAATCATGCTTGCTGAT
GGAACAAAAGTTGTTGGTGAGCTAGTCGGAGCAGATACTTATTCAGATATTGCCGTTGTCAAAATTTCTTCTGACAACGT
ATCTACAGTTGCTGAATTTGCCGATTCTGATAAATTAACTGTCGGTGAAACTGCTATCGCTATTGGTAGCCCACTTGGTA
CTGAATATGCTAACTCTGTAACACAAGGTATTGTCTCAAGTCTTAGCCGTACAGTAACTATGACAAATGATGATGGTGAA
ACTATCTCAACAAATGCTATCCAAACGGATGCAGCGATTAACCCAGGTAACTCTGGTGGTGCTTTAATTAACATTGAAGG
ACAAGTTATCGGTATCAATTCAAGTAAGATTTCATCTACATCAAGTTCTGGTGAATCTGTCGAAGGTATGGGATTTGCCA
TTCCATCTAACGATGTTGTATCCATTATTAACCAATTGGAAGAAAATGGGCAAGTTATCCGCCCAGCACTTGGTATTTCA
ATGGTAAACTTGAGCGACCTTTCAACAAATGCAATTGCTCAACTTAACATTCCAACAAGTGTAACAAGCGGTGTCGTTGT
GGCGGCTGTTCAATCTGGTATGCCAGCTGAAGGTAATCTCGAACAATATGATGTCATCACAGCTATTGACGACCAAGAAG
TAACATCTACTTCAGATCTTCAAAGTATCCTTTATACTCATTCTGTTGGTGACTCTGTCAAAGTAACCTTCTACCGTGGA
ACTGATAAGAAAACAGCCACAATTGAATTAACTAAGACAACACAAGATTTATCTTCCTCAAACTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mutans UA159

64.444

96.2

0.62

  htrA Streptococcus gordonii str. Challis substr. CH1

59.804

96.912

0.58

  htrA Streptococcus pneumoniae D39

57.908

97.625

0.565

  htrA Streptococcus pneumoniae TIGR4

57.908

97.625

0.565

  htrA Streptococcus mitis NCTC 12261

57.908

97.625

0.565

  htrA Streptococcus pneumoniae R6

57.908

97.625

0.565

  htrA Streptococcus pneumoniae Rx1

57.908

97.625

0.565