Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   I6L40_RS06375 Genome accession   NZ_CP077401
Coordinates   1319002..1319322 (-) Length   106 a.a.
NCBI ID   WP_033114923.1    Uniprot ID   A0AAQ0EDI8
Organism   Aeromonas sp. FDAARGOS 1410     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1314002..1324322
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L40_RS06355 (I6L40_06355) - 1314395..1315084 (-) 690 WP_043851814.1 DnaT-like ssDNA-binding domain-containing protein -
  I6L40_RS06360 (I6L40_06360) - 1315324..1316295 (+) 972 WP_071914412.1 response regulator -
  I6L40_RS06365 (I6L40_06365) - 1316384..1317781 (-) 1398 WP_042031806.1 peptide MFS transporter -
  I6L40_RS06370 (I6L40_06370) galU 1317995..1318906 (-) 912 WP_041210396.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  I6L40_RS06375 (I6L40_06375) comEA/comE1 1319002..1319322 (-) 321 WP_033114923.1 helix-hairpin-helix domain-containing protein Machinery gene
  I6L40_RS06380 (I6L40_06380) pta 1319661..1321841 (-) 2181 WP_041210398.1 phosphate acetyltransferase -
  I6L40_RS06385 (I6L40_06385) - 1321897..1323099 (-) 1203 WP_005339118.1 acetate kinase -
  I6L40_RS06390 (I6L40_06390) yfbV 1323404..1323844 (+) 441 WP_005339116.1 terminus macrodomain insulation protein YfbV -

Sequence

Protein


Download         Length: 106 a.a.        Molecular weight: 11338.19 Da        Isoelectric Point: 10.0127

>NTDB_id=581252 I6L40_RS06375 WP_033114923.1 1319002..1319322(-) (comEA/comE1) [Aeromonas sp. FDAARGOS 1410]
MRKNSLSIIMLLSALPLFTQPSLAADKVAPKQATTVAAKQESGKVDINTATLAELTNLKGIGDKKAQAIVDYREKQGKFT
SVDQLVDVNGIGPATLEANRDMIIVK

Nucleotide


Download         Length: 321 bp        

>NTDB_id=581252 I6L40_RS06375 WP_033114923.1 1319002..1319322(-) (comEA/comE1) [Aeromonas sp. FDAARGOS 1410]
ATGCGTAAAAACAGCTTGTCCATCATCATGTTGCTGTCCGCCCTGCCATTGTTCACCCAGCCCTCACTGGCGGCAGACAA
GGTCGCACCGAAGCAGGCCACCACGGTTGCCGCCAAGCAGGAGAGCGGCAAAGTGGATATCAATACGGCAACCCTTGCCG
AGCTCACCAACCTCAAGGGAATTGGTGACAAGAAGGCACAAGCCATCGTCGACTATCGCGAAAAACAGGGGAAATTTACC
TCAGTTGATCAACTGGTTGATGTAAACGGCATCGGCCCGGCCACGCTGGAAGCCAACCGTGACATGATCATCGTCAAATA
A

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(42-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

47.826

100

0.519
  comEA Vibrio cholerae C6706

50.485

97.17

0.491
  comEA Vibrio cholerae strain A1552

50.485

97.17

0.491
  comE1/comEA Haemophilus influenzae Rd KW20

43.75

100

0.462
  comEA Vibrio parahaemolyticus RIMD 2210633

45.455

93.396

0.425
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

38.235

96.226

0.368