Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   I6L36_RS15745 Genome accession   NZ_CP077378
Coordinates   3321693..3322802 (-) Length   369 a.a.
NCBI ID   WP_109112046.1    Uniprot ID   -
Organism   Aeromonas sp. FDAARGOS 1406     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3316693..3327802
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L36_RS15720 (I6L36_15720) - 3316826..3317053 (+) 228 WP_109112049.1 hypothetical protein -
  I6L36_RS15725 (I6L36_15725) brnQ 3317143..3318405 (-) 1263 WP_050485178.1 branched-chain amino acid transport system II carrier protein -
  I6L36_RS15730 (I6L36_15730) - 3318641..3319351 (-) 711 WP_119197006.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  I6L36_RS15735 (I6L36_15735) srmB 3319479..3320699 (+) 1221 WP_041210934.1 ATP-dependent RNA helicase SrmB -
  I6L36_RS15740 (I6L36_15740) yaaA 3320887..3321660 (-) 774 WP_109112047.1 peroxide stress protein YaaA -
  I6L36_RS15745 (I6L36_15745) pilU 3321693..3322802 (-) 1110 WP_109112046.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  I6L36_RS15750 (I6L36_15750) pilT 3322826..3323860 (-) 1035 WP_010673050.1 type IVa pilus ATPase TapT Machinery gene
  I6L36_RS15755 (I6L36_15755) - 3323900..3324601 (+) 702 WP_041210937.1 YggS family pyridoxal phosphate-dependent enzyme -
  I6L36_RS15760 (I6L36_15760) proC 3324725..3325549 (+) 825 WP_109112045.1 pyrroline-5-carboxylate reductase -
  I6L36_RS15765 (I6L36_15765) - 3325573..3326124 (+) 552 WP_010673053.1 YggT family protein -
  I6L36_RS15770 (I6L36_15770) yggU 3326124..3326423 (+) 300 WP_104455228.1 DUF167 family protein YggU -
  I6L36_RS15775 (I6L36_15775) - 3326442..3326861 (+) 420 WP_029313762.1 DUF4426 domain-containing protein -
  I6L36_RS15780 (I6L36_15780) - 3326937..3327767 (-) 831 WP_201921265.1 CPBP family intramembrane glutamic endopeptidase -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 40886.97 Da        Isoelectric Point: 6.1844

>NTDB_id=581025 I6L36_RS15745 WP_109112046.1 3321693..3322802(-) (pilU) [Aeromonas sp. FDAARGOS 1406]
MNMDVLLAALVEQKGSDLFITVDAPPTLKVNGRLVSLGPAPLDNTTALALIRESLDETHFERFLHTREANYAIQRGSLGR
FRVSAFWQQDMPGMVLRRIETRIPTFDELVLPPILQEVAMAKRGLVLFVGATGAGKSTTQAAMIGFRNQHGDGHILTVED
PVEFVHQHDRCLVTQREVGIDTASFDVALKNSLRQAPDVILIGEIRSQETMEFAIQFAETGHLCLATLHANNANQALDRI
LHLVPQEKHRQFLFDLSFNLRAIVAQQLLPSAHGQRRVAAFEILLNTPLVTDIIRKGEMHRLKEVMTKSGELGMQTFDQA
LFTLFCAGQIGYSEALAHADSANDLRLLIKLSGREQLGAGTLDNVTLDE

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=581025 I6L36_RS15745 WP_109112046.1 3321693..3322802(-) (pilU) [Aeromonas sp. FDAARGOS 1406]
ATGAACATGGATGTTCTGCTCGCCGCACTGGTTGAACAAAAGGGCTCGGATCTCTTCATCACGGTCGATGCCCCCCCGAC
CCTCAAGGTCAACGGGCGTCTGGTGTCGCTCGGACCAGCCCCCCTCGACAATACGACGGCGCTGGCGTTGATCAGGGAGA
GCCTGGACGAGACCCACTTCGAGCGTTTCCTGCACACCCGCGAGGCCAACTACGCCATCCAGCGAGGCTCGCTGGGGCGC
TTTCGGGTCAGCGCCTTCTGGCAACAGGATATGCCGGGCATGGTGCTGCGCCGCATCGAGACCCGCATCCCCACCTTTGA
CGAGCTGGTGCTGCCTCCCATCCTGCAGGAGGTCGCCATGGCCAAACGCGGGCTGGTGCTCTTCGTCGGCGCCACCGGTG
CCGGCAAGTCCACCACCCAGGCGGCCATGATCGGCTTTCGCAACCAGCACGGTGACGGCCACATCCTGACGGTGGAGGAT
CCGGTGGAGTTCGTCCATCAGCACGATCGCTGCCTGGTGACCCAGCGGGAGGTGGGGATCGACACCGCATCCTTCGATGT
CGCCCTCAAAAATTCCCTGCGCCAGGCCCCGGATGTCATCCTCATCGGTGAAATCCGCTCCCAGGAGACCATGGAGTTCG
CCATCCAGTTCGCCGAGACGGGGCACCTCTGCCTCGCCACCTTGCACGCCAACAATGCCAACCAGGCGCTGGATCGCATC
CTGCATCTGGTCCCCCAGGAGAAGCACCGCCAGTTCCTGTTCGATCTCTCCTTCAACCTGCGCGCCATCGTCGCCCAGCA
GCTGCTCCCCTCCGCTCATGGGCAGCGCCGGGTCGCCGCCTTCGAGATCCTGCTCAACACCCCGCTCGTCACCGACATCA
TCCGCAAGGGAGAGATGCACAGACTCAAGGAGGTGATGACCAAATCCGGCGAGCTCGGCATGCAGACCTTCGATCAGGCG
CTGTTCACCCTGTTCTGCGCCGGCCAAATTGGCTACAGTGAGGCCCTTGCCCATGCCGACTCCGCCAACGACCTGCGACT
GCTCATCAAGCTGTCGGGTCGCGAGCAGCTGGGCGCAGGCACTCTCGACAACGTGACCCTGGATGAATGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(115-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Vibrio cholerae strain A1552

60.598

99.729

0.604
  pilU Pseudomonas stutzeri DSM 10701

58.974

95.122

0.561
  pilU Acinetobacter baylyi ADP1

57.79

95.664

0.553
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.857

91.057

0.39
  pilT Legionella pneumophila strain Lp02

40.816

92.954

0.379
  pilT Legionella pneumophila strain ERS1305867

40.816

92.954

0.379