Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGE/cglE   Type   Machinery gene
Locus tag   I6L85_RS01275 Genome accession   NZ_CP077248
Coordinates   231956..232249 (+) Length   97 a.a.
NCBI ID   WP_111724180.1    Uniprot ID   -
Organism   Streptococcus gordonii strain FDAARGOS 1455     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 226956..237249
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L85_RS01250 (I6L85_01250) - 228906..229274 (+) 369 WP_046164737.1 DUF1033 family protein -
  I6L85_RS01255 (I6L85_01255) comYA 229377..230315 (+) 939 WP_111724182.1 competence type IV pilus ATPase ComGA Machinery gene
  I6L85_RS01260 (I6L85_01260) comYB 230248..231282 (+) 1035 WP_111724181.1 competence type IV pilus assembly protein ComGB Machinery gene
  I6L85_RS01265 (I6L85_01265) comYC 231279..231596 (+) 318 WP_012130940.1 competence type IV pilus major pilin ComGC Machinery gene
  I6L85_RS01270 (I6L85_01270) comYD 231556..231984 (+) 429 WP_012130939.1 competence type IV pilus minor pilin ComGD Machinery gene
  I6L85_RS01275 (I6L85_01275) comGE/cglE 231956..232249 (+) 294 WP_111724180.1 competence type IV pilus minor pilin ComGE Machinery gene
  I6L85_RS01280 (I6L85_01280) comGF/cglF 232233..232670 (+) 438 WP_111724179.1 competence type IV pilus minor pilin ComGF Machinery gene
  I6L85_RS01285 (I6L85_01285) comGG 232651..233082 (+) 432 WP_231872498.1 competence type IV pilus minor pilin ComGG -
  I6L85_RS01290 (I6L85_01290) comYH 233113..234066 (+) 954 WP_111724178.1 class I SAM-dependent methyltransferase Machinery gene
  I6L85_RS01295 (I6L85_01295) - 234116..235306 (+) 1191 WP_045634156.1 acetate kinase -
  I6L85_RS01300 (I6L85_01300) - 235352..236017 (+) 666 WP_111724177.1 CPBP family intramembrane glutamic endopeptidase -
  I6L85_RS01305 (I6L85_01305) folP 236094..237059 (+) 966 WP_111724176.1 dihydropteroate synthase -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10926.86 Da        Isoelectric Point: 10.0864

>NTDB_id=580245 I6L85_RS01275 WP_111724180.1 231956..232249(+) (comGE/cglE) [Streptococcus gordonii strain FDAARGOS 1455]
MANLRKRQIKGTILLEALLALGVFAVIASLLLGQITQSRKEAAVILEKEEVLRVAQMALQTGQDHLSLNGIEIRIQRTKD
QIRVFHQGEELIDVEKR

Nucleotide


Download         Length: 294 bp        

>NTDB_id=580245 I6L85_RS01275 WP_111724180.1 231956..232249(+) (comGE/cglE) [Streptococcus gordonii strain FDAARGOS 1455]
ATGGCAAATTTAAGAAAACGACAAATTAAAGGGACTATCTTACTGGAAGCCTTACTAGCTTTGGGAGTTTTTGCTGTAAT
TGCAAGTTTGCTACTAGGTCAAATCACGCAATCACGCAAAGAAGCAGCTGTCATTTTAGAAAAAGAAGAGGTCCTGCGGG
TGGCCCAAATGGCCCTCCAAACAGGGCAGGACCATCTTTCATTAAATGGCATTGAAATTCGGATTCAGAGAACAAAGGAT
CAGATTCGAGTGTTCCATCAGGGGGAGGAATTGATTGATGTTGAAAAAAGGTAA

Domains

Predicted by InterproScan.

Type II secretory pathway pseudopilin (ComGE)

(13-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE/cglE Streptococcus pneumoniae Rx1

53.763

95.876

0.515
  comGE/cglE Streptococcus pneumoniae D39

53.763

95.876

0.515
  comGE/cglE Streptococcus pneumoniae R6

53.763

95.876

0.515
  comGE/cglE Streptococcus pneumoniae TIGR4

53.763

95.876

0.515
  comGE/cglE Streptococcus mitis NCTC 12261

51.613

95.876

0.495
  comGE/cglE Streptococcus mitis SK321

51.613

95.876

0.495
  comYE Streptococcus mutans UA140

41.237

100

0.412
  comYE Streptococcus mutans UA159

41.237

100

0.412