Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | I6L85_RS01290 | Genome accession | NZ_CP077248 |
| Coordinates | 233113..234066 (+) | Length | 317 a.a. |
| NCBI ID | WP_111724178.1 | Uniprot ID | - |
| Organism | Streptococcus gordonii strain FDAARGOS 1455 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 228113..239066
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6L85_RS01250 (I6L85_01250) | - | 228906..229274 (+) | 369 | WP_046164737.1 | DUF1033 family protein | - |
| I6L85_RS01255 (I6L85_01255) | comYA | 229377..230315 (+) | 939 | WP_111724182.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| I6L85_RS01260 (I6L85_01260) | comYB | 230248..231282 (+) | 1035 | WP_111724181.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| I6L85_RS01265 (I6L85_01265) | comYC | 231279..231596 (+) | 318 | WP_012130940.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| I6L85_RS01270 (I6L85_01270) | comYD | 231556..231984 (+) | 429 | WP_012130939.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| I6L85_RS01275 (I6L85_01275) | comGE/cglE | 231956..232249 (+) | 294 | WP_111724180.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| I6L85_RS01280 (I6L85_01280) | comGF/cglF | 232233..232670 (+) | 438 | WP_111724179.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| I6L85_RS01285 (I6L85_01285) | comGG | 232651..233082 (+) | 432 | WP_231872498.1 | competence type IV pilus minor pilin ComGG | - |
| I6L85_RS01290 (I6L85_01290) | comYH | 233113..234066 (+) | 954 | WP_111724178.1 | class I SAM-dependent methyltransferase | Machinery gene |
| I6L85_RS01295 (I6L85_01295) | - | 234116..235306 (+) | 1191 | WP_045634156.1 | acetate kinase | - |
| I6L85_RS01300 (I6L85_01300) | - | 235352..236017 (+) | 666 | WP_111724177.1 | CPBP family intramembrane glutamic endopeptidase | - |
| I6L85_RS01305 (I6L85_01305) | folP | 236094..237059 (+) | 966 | WP_111724176.1 | dihydropteroate synthase | - |
| I6L85_RS01310 (I6L85_01310) | - | 237064..238395 (+) | 1332 | WP_231872510.1 | folylpolyglutamate synthase/dihydrofolate synthase family protein | - |
Sequence
Protein
Download Length: 317 a.a. Molecular weight: 36056.27 Da Isoelectric Point: 4.8739
>NTDB_id=580247 I6L85_RS01290 WP_111724178.1 233113..234066(+) (comYH) [Streptococcus gordonii strain FDAARGOS 1455]
MNFEKIEEAYTLLLENVQVIQNKLSTNFYDALIEQNGIYLDGQMDLEIVKKNHQTLKSLKLSREEWRRAYQFILMKASQT
EPLQANHQFTPDAIGFLLIFIIDQLMVASDITLLEMGSGTGNLAETILNNSQKEIDYLGLEIDDLLIDLSASIAEVMGSK
AHFAQGDAVRPQVLKESDLIISDLPVGYYPDDQIASRYQVASQTEHTYAHHLLMEQALKYLKVDGYAIFLAPNHLLTSPQ
SDLLKSWLKDNASLVAMIALPEKLFASVSQAKTVFVLQKQKNIKAEPFVYALADLQNHEEITRFRESFQKWRKVSEN
MNFEKIEEAYTLLLENVQVIQNKLSTNFYDALIEQNGIYLDGQMDLEIVKKNHQTLKSLKLSREEWRRAYQFILMKASQT
EPLQANHQFTPDAIGFLLIFIIDQLMVASDITLLEMGSGTGNLAETILNNSQKEIDYLGLEIDDLLIDLSASIAEVMGSK
AHFAQGDAVRPQVLKESDLIISDLPVGYYPDDQIASRYQVASQTEHTYAHHLLMEQALKYLKVDGYAIFLAPNHLLTSPQ
SDLLKSWLKDNASLVAMIALPEKLFASVSQAKTVFVLQKQKNIKAEPFVYALADLQNHEEITRFRESFQKWRKVSEN
Nucleotide
Download Length: 954 bp
>NTDB_id=580247 I6L85_RS01290 WP_111724178.1 233113..234066(+) (comYH) [Streptococcus gordonii strain FDAARGOS 1455]
ATGAATTTTGAAAAAATTGAAGAAGCCTATACGCTCCTTTTAGAAAATGTCCAAGTCATTCAAAACAAGCTTTCAACTAA
TTTTTATGATGCCTTAATCGAGCAAAACGGTATCTATTTGGATGGGCAAATGGACTTAGAAATTGTCAAAAAAAATCATC
AGACCTTGAAGAGCTTAAAGCTAAGCAGAGAAGAATGGCGCAGAGCCTATCAGTTCATTCTGATGAAGGCTTCTCAGACA
GAACCTTTGCAAGCCAATCATCAGTTTACACCAGATGCCATTGGTTTTCTGCTGATTTTCATCATTGACCAGCTGATGGT
AGCATCAGATATTACTCTTCTTGAGATGGGAAGTGGAACTGGAAATCTTGCAGAGACAATCCTGAACAATAGTCAGAAGG
AGATTGATTATCTAGGATTAGAAATCGATGATTTACTGATTGACCTATCTGCCAGTATTGCAGAAGTGATGGGTTCAAAG
GCACATTTTGCCCAGGGAGATGCTGTGCGCCCTCAAGTTCTAAAAGAGAGCGACTTGATTATCAGCGATCTGCCTGTCGG
TTACTATCCGGATGATCAGATTGCCAGTCGCTATCAGGTAGCCAGTCAGACAGAGCACACCTATGCTCATCATCTGTTGA
TGGAGCAGGCATTAAAGTATTTAAAGGTTGATGGCTATGCGATCTTCTTAGCTCCTAATCATCTCTTAACCAGCCCGCAG
AGCGACTTGCTTAAATCCTGGCTCAAAGACAATGCCAGCTTAGTAGCAATGATTGCTTTGCCAGAAAAACTCTTTGCATC
AGTTTCTCAGGCTAAGACGGTGTTTGTTTTGCAAAAACAAAAAAATATAAAAGCTGAGCCTTTTGTCTATGCATTAGCAG
ATCTACAAAATCATGAAGAAATTACTCGCTTCCGCGAAAGTTTTCAAAAATGGCGCAAAGTTAGTGAAAACTGA
ATGAATTTTGAAAAAATTGAAGAAGCCTATACGCTCCTTTTAGAAAATGTCCAAGTCATTCAAAACAAGCTTTCAACTAA
TTTTTATGATGCCTTAATCGAGCAAAACGGTATCTATTTGGATGGGCAAATGGACTTAGAAATTGTCAAAAAAAATCATC
AGACCTTGAAGAGCTTAAAGCTAAGCAGAGAAGAATGGCGCAGAGCCTATCAGTTCATTCTGATGAAGGCTTCTCAGACA
GAACCTTTGCAAGCCAATCATCAGTTTACACCAGATGCCATTGGTTTTCTGCTGATTTTCATCATTGACCAGCTGATGGT
AGCATCAGATATTACTCTTCTTGAGATGGGAAGTGGAACTGGAAATCTTGCAGAGACAATCCTGAACAATAGTCAGAAGG
AGATTGATTATCTAGGATTAGAAATCGATGATTTACTGATTGACCTATCTGCCAGTATTGCAGAAGTGATGGGTTCAAAG
GCACATTTTGCCCAGGGAGATGCTGTGCGCCCTCAAGTTCTAAAAGAGAGCGACTTGATTATCAGCGATCTGCCTGTCGG
TTACTATCCGGATGATCAGATTGCCAGTCGCTATCAGGTAGCCAGTCAGACAGAGCACACCTATGCTCATCATCTGTTGA
TGGAGCAGGCATTAAAGTATTTAAAGGTTGATGGCTATGCGATCTTCTTAGCTCCTAATCATCTCTTAACCAGCCCGCAG
AGCGACTTGCTTAAATCCTGGCTCAAAGACAATGCCAGCTTAGTAGCAATGATTGCTTTGCCAGAAAAACTCTTTGCATC
AGTTTCTCAGGCTAAGACGGTGTTTGTTTTGCAAAAACAAAAAAATATAAAAGCTGAGCCTTTTGTCTATGCATTAGCAG
ATCTACAAAATCATGAAGAAATTACTCGCTTCCGCGAAAGTTTTCAAAAATGGCGCAAAGTTAGTGAAAACTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA159 |
59.105 |
98.738 |
0.584 |
| comYH | Streptococcus mutans UA140 |
59.105 |
98.738 |
0.584 |