Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC/comC1   Type   Regulator
Locus tag   I6L85_RS00065 Genome accession   NZ_CP077248
Coordinates   12912..13076 (+) Length   54 a.a.
NCBI ID   WP_080998577.1    Uniprot ID   -
Organism   Streptococcus gordonii strain FDAARGOS 1455     
Function   binding to ComD; induce autophosphorylation of ComD (predicted from homology)   
Competence regulation

Genomic Context

Location: 7912..18076
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L85_RS00040 (I6L85_00040) dnaA 8375..9727 (-) 1353 WP_111723071.1 chromosomal replication initiator protein DnaA -
  I6L85_RS00045 (I6L85_00045) spo0J 9930..10694 (-) 765 WP_111724269.1 ParB/RepB/Spo0J family partition protein Regulator
  I6L85_RS00050 (I6L85_00050) htrA 10760..11953 (-) 1194 WP_111724268.1 S1C family serine protease Regulator
  I6L85_RS00055 (I6L85_00055) rlmH 12147..12626 (+) 480 WP_008808034.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  I6L85_RS00065 (I6L85_00065) comC/comC1 12912..13076 (+) 165 WP_080998577.1 bacteriocin Regulator
  I6L85_RS00070 (I6L85_00070) comD/comD1 13089..14450 (+) 1362 WP_269459934.1 competence system sensor histidine kinase ComD Regulator
  I6L85_RS00075 (I6L85_00075) comE/comE2 14447..15214 (+) 768 WP_008808031.1 competence system response regulator transcription factor ComE Regulator
  I6L85_RS00090 (I6L85_00090) ychF 15536..16651 (+) 1116 WP_008808030.1 redox-regulated ATPase YchF -
  I6L85_RS00095 (I6L85_00095) pth 16724..17293 (+) 570 WP_111724267.1 aminoacyl-tRNA hydrolase -

Sequence

Protein


Download         Length: 54 a.a.        Molecular weight: 6369.44 Da        Isoelectric Point: 11.2504

>NTDB_id=580228 I6L85_RS00065 WP_080998577.1 12912..13076(+) (comC/comC1) [Streptococcus gordonii strain FDAARGOS 1455]
MKKKNKQNLLPKELQQFEILTDNKLQTVIGGSQKGVYASQRSFVPSWFRKIFRN

Nucleotide


Download         Length: 165 bp        

>NTDB_id=580228 I6L85_RS00065 WP_080998577.1 12912..13076(+) (comC/comC1) [Streptococcus gordonii strain FDAARGOS 1455]
ATGAAAAAGAAAAACAAACAAAATTTATTGCCAAAAGAGTTACAACAATTTGAAATTTTGACAGATAATAAACTTCAAAC
AGTCATTGGGGGATCTCAAAAAGGTGTTTATGCCAGTCAGAGATCATTTGTTCCAAGTTGGTTCCGTAAAATTTTTAGAA
ATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC/comC1 Streptococcus gordonii str. Challis substr. CH1

55.556

100

0.556
  comC/comC2 Streptococcus gordonii strain NCTC7865

81.25

59.259

0.481