Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB   Type   Machinery gene
Locus tag   KR767_RS01565 Genome accession   NZ_CP077072
Coordinates   345069..346802 (+) Length   577 a.a.
NCBI ID   WP_250877894.1    Uniprot ID   -
Organism   Luteibacter anthropi strain SM7.4     
Function   power the assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 340069..351802
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KR767_RS01545 (KR767_01555) - 340905..341786 (-) 882 WP_250877890.1 glycosyltransferase family 2 protein -
  KR767_RS01550 (KR767_01560) - 341951..342868 (+) 918 WP_250877891.1 glycosyltransferase -
  KR767_RS01555 (KR767_01565) - 342860..344065 (-) 1206 WP_250877892.1 glycosyltransferase -
  KR767_RS01560 (KR767_01570) - 344058..344912 (-) 855 WP_250877893.1 glycosyltransferase family 2 protein -
  KR767_RS01565 (KR767_01575) pilB 345069..346802 (+) 1734 WP_250877894.1 type IV-A pilus assembly ATPase PilB Machinery gene
  KR767_RS01570 (KR767_01580) pilC 346936..348201 (+) 1266 WP_250877895.1 type II secretion system F family protein Machinery gene
  KR767_RS01575 (KR767_01585) - 348106..349470 (-) 1365 WP_250877896.1 hypothetical protein -
  KR767_RS01580 (KR767_01590) - 349675..350544 (+) 870 WP_250877897.1 A24 family peptidase -
  KR767_RS01585 (KR767_01595) coaE 350541..351149 (+) 609 WP_166952735.1 dephospho-CoA kinase -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62892.41 Da        Isoelectric Point: 6.4451

>NTDB_id=578616 KR767_RS01565 WP_250877894.1 345069..346802(+) (pilB) [Luteibacter anthropi strain SM7.4]
MVSNMQQPMLAGLTGMARRLVSEGVLPEADVRKAVQDAADKRVSLSSWLVDHNLVDSGRLSQVASAEFGMPLMDVSAMTP
ANLPLDLVTEALISKHQALPLFRRGKRLFVGIADPMQSHALDEIKFHSNHMVEPVLVERAQLRRVIDNALSTMTSNVPGF
EDGGGLDELSLESGEDEADGSSTGIDANANDDAPVVKFVNKILVDAIKRGASDIHFEPFEAVYRVRLRMDGILRIVANAP
IKLGNRIASRLKVMSGLDIAERRVPQDGRIKLNLTKTRAIDFRVSTLPTLFGEKIVLRILDGSSAKLGIDKLGYEEHQKK
LYLDAIDKPYGMVLVTGPTGSGKTVSLYTALNILNIEGRNISTVEDPVEIRVEGINQVQQNTKRGMTFAAALRSFLRQDP
DVIMVGEIRDLETAEIAVKAAQTGHMVLSTLHTNDAPQTISRLMNMGIAPYNITSSVTLIIAQRLARRLHDCKREVHLPA
AALLAEGFTQEDIDAGMTVYEPVGCDGCNDGYKGRVGIYQVMPMVEDIQKIVLEGGNALQIAEVARKAGINDLRASALLK
VRNGVTSLAEINRVTKD

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=578616 KR767_RS01565 WP_250877894.1 345069..346802(+) (pilB) [Luteibacter anthropi strain SM7.4]
ATGGTTTCAAACATGCAGCAACCCATGCTCGCCGGGCTGACGGGCATGGCTCGGCGGCTCGTCAGTGAAGGCGTCCTGCC
GGAGGCCGACGTCCGCAAGGCCGTCCAGGACGCCGCTGACAAGCGGGTGTCTCTTTCGTCGTGGCTGGTCGACCACAACC
TGGTCGACAGCGGCCGGTTGTCGCAGGTGGCCTCCGCCGAATTCGGCATGCCGCTGATGGACGTGTCTGCCATGACGCCG
GCCAACCTGCCCCTGGATCTGGTCACGGAGGCACTGATCTCCAAACATCAGGCCCTGCCCCTGTTCCGCCGGGGCAAGCG
CCTTTTCGTCGGCATCGCCGATCCCATGCAGTCGCATGCGCTGGACGAGATCAAGTTCCACTCCAATCATATGGTGGAGC
CGGTACTGGTTGAGCGCGCCCAGCTGCGGCGTGTGATCGACAACGCCCTGTCGACCATGACCAGCAACGTCCCCGGCTTC
GAGGACGGCGGCGGCCTGGACGAACTCTCGCTGGAAAGCGGCGAGGACGAGGCCGACGGCAGTTCCACCGGCATCGACGC
CAACGCCAATGACGACGCGCCTGTCGTCAAGTTCGTCAACAAGATTCTGGTCGATGCGATCAAGCGCGGTGCCTCGGACA
TTCATTTCGAGCCGTTCGAGGCCGTATACCGCGTGCGCCTGCGCATGGATGGCATCCTGCGCATCGTGGCCAATGCGCCG
ATCAAGCTGGGTAATCGCATCGCCTCGCGCCTGAAGGTGATGAGCGGCCTGGATATCGCGGAAAGGCGCGTGCCGCAGGA
CGGCCGCATCAAGCTCAACCTGACCAAGACCCGGGCCATCGATTTCCGCGTGAGCACGCTGCCCACGCTGTTCGGCGAGA
AGATCGTGCTGCGTATCCTGGACGGTTCGTCGGCCAAGCTCGGCATCGACAAGCTGGGCTACGAAGAACACCAGAAGAAG
CTTTACCTCGATGCCATCGACAAGCCCTACGGCATGGTCCTGGTCACCGGCCCCACGGGCTCGGGCAAGACGGTCTCGCT
GTACACGGCGCTGAACATCCTCAACATCGAGGGGCGCAATATCTCCACCGTGGAAGACCCCGTGGAAATCCGTGTCGAGG
GCATCAACCAGGTCCAGCAGAACACCAAGCGCGGCATGACCTTCGCGGCGGCCCTGCGATCGTTCCTGCGCCAGGACCCG
GACGTCATCATGGTGGGCGAAATCCGCGACCTGGAAACAGCCGAAATCGCCGTGAAGGCCGCCCAGACCGGTCACATGGT
GCTCTCTACCCTGCATACCAACGATGCCCCTCAGACCATCTCGCGACTGATGAACATGGGCATCGCGCCCTACAACATCA
CCTCGTCGGTCACCCTGATCATCGCCCAGCGCCTGGCCCGCCGCCTGCACGACTGCAAACGCGAGGTCCACCTGCCCGCA
GCGGCCCTGCTTGCCGAGGGCTTCACGCAGGAGGACATCGATGCTGGCATGACCGTCTACGAGCCGGTCGGCTGCGATGG
CTGCAACGATGGCTACAAGGGCCGTGTAGGCATCTACCAGGTCATGCCCATGGTCGAGGACATCCAGAAGATCGTCCTGG
AAGGGGGCAACGCCCTGCAGATCGCCGAAGTGGCGCGCAAGGCGGGCATCAACGACCTGCGGGCCTCGGCTTTGCTCAAG
GTGCGCAACGGCGTCACCAGCCTGGCCGAGATCAACCGCGTCACCAAGGATTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(20-153)

Type II/IV secretion system protein (T2SSE)

(201-468)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB Acinetobacter baumannii D1279779

55.379

98.267

0.544
  pilB Acinetobacter baylyi ADP1

53.968

98.267

0.53
  pilB Legionella pneumophila strain ERS1305867

49.561

98.614

0.489
  pilB Vibrio cholerae strain A1552

47.518

97.747

0.464
  pilF Neisseria gonorrhoeae MS11

50.281

92.374

0.464
  pilB Vibrio campbellii strain DS40M4

46.842

98.787

0.463
  pilB Vibrio parahaemolyticus RIMD 2210633

47.173

98.094

0.463
  pilB Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

36.195

100

0.373
  pilF Thermus thermophilus HB27

37.478

97.574

0.366