Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   KQY33_RS04505 Genome accession   NZ_CP076733
Coordinates   906416..906703 (+) Length   95 a.a.
NCBI ID   WP_005298268.1    Uniprot ID   A0A2T3I6M0
Organism   Photobacterium damselae strain Pdd2008     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 901416..911703
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQY33_RS04495 (KQY33_04490) hupB 903731..904003 (+) 273 WP_005298263.1 nucleoid-associated protein HU-beta -
  KQY33_RS04500 (KQY33_04495) ppiD 904354..906252 (+) 1899 WP_284634249.1 peptidylprolyl isomerase -
  KQY33_RS04505 (KQY33_04500) comEA 906416..906703 (+) 288 WP_005298268.1 ComEA family DNA-binding protein Machinery gene
  KQY33_RS04510 (KQY33_04505) - 906788..907126 (-) 339 WP_068947005.1 DUF1971 domain-containing protein -
  KQY33_RS04515 (KQY33_04510) rrtA 907213..907770 (-) 558 WP_264954954.1 rhombosortase -
  KQY33_RS04520 (KQY33_04515) - 907780..908397 (+) 618 WP_284634250.1 tRNA-uridine aminocarboxypropyltransferase -
  KQY33_RS04525 (KQY33_04520) - 908644..909972 (-) 1329 WP_284634251.1 anti-phage deoxyguanosine triphosphatase -
  KQY33_RS04530 (KQY33_04525) yfbR 909972..910556 (-) 585 WP_068947009.1 5'-deoxynucleotidase -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10446.17 Da        Isoelectric Point: 6.3453

>NTDB_id=577817 KQY33_RS04505 WP_005298268.1 906416..906703(+) (comEA) [Photobacterium damselae strain Pdd2008]
MKQGFVAVVMALAMLLTPLAYAAKDKYEDIEIVVNINKANAEELDKLLVGIGPDKAENIIQYRKQNGKFATADDLAKVKG
IGPSTVEKNRDRIEL

Nucleotide


Download         Length: 288 bp        

>NTDB_id=577817 KQY33_RS04505 WP_005298268.1 906416..906703(+) (comEA) [Photobacterium damselae strain Pdd2008]
ATGAAACAAGGATTTGTTGCTGTAGTAATGGCATTAGCAATGCTACTTACCCCGTTAGCTTATGCAGCGAAAGATAAGTA
CGAAGATATTGAAATTGTTGTCAATATTAATAAAGCAAATGCAGAAGAGTTGGATAAATTACTGGTTGGAATCGGCCCAG
ATAAGGCTGAAAATATTATCCAATATCGTAAGCAAAATGGTAAATTTGCGACCGCGGATGATCTTGCTAAGGTAAAAGGC
ATTGGCCCCTCAACCGTAGAAAAAAACCGCGATCGCATTGAACTGTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(33-93)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2T3I6M0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio parahaemolyticus RIMD 2210633

54.118

89.474

0.484
  comEA Vibrio campbellii strain DS40M4

53.488

90.526

0.484
  comEA Vibrio cholerae C6706

44.554

100

0.474
  comEA Vibrio cholerae strain A1552

44.554

100

0.474
  comE1/comEA Haemophilus influenzae Rd KW20

39.091

100

0.453
  comEA Acinetobacter baylyi ADP1

57.812

67.368

0.389