Detailed information NTG0057779

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: CCX78_RS07995
• Genome accession: NZ_AP017931
• Coordinates: 1537230..1538237 (-)
• Length: 335 a.a.
• NCBI ID: WP_011374076.1
• Uniprot ID: Q38YQ9
• Organism: Latilactobacillus sakei strain LK-145
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1532230..1543237

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CCX78_RS07975 (LASAK_01568)	argF	1533153..1534169 (-)	1017	WP_011374080.1	ornithine carbamoyltransferase	-
CCX78_RS07980 (LASAK_01569)	arcA	1534188..1535429 (-)	1242	WP_096585411.1	arginine deiminase	-
CCX78_RS07985 (LASAK_01571)	-	1535636..1536157 (-)	522	WP_231952325.1	GNAT family N-acetyltransferase	-
CCX78_RS07990 (LASAK_01572)	queA	1536184..1537215 (-)	1032	WP_011374077.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
CCX78_RS07995 (LASAK_01573)	ruvB	1537230..1538237 (-)	1008	WP_011374076.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
CCX78_RS08000 (LASAK_01574)	ruvA	1538250..1538861 (-)	612	WP_011374075.1	Holliday junction branch migration protein RuvA	Machinery gene
CCX78_RS10340	-	1539272..1539833 (-)	562	Protein_1533	TIGR00730 family Rossman fold protein	-
CCX78_RS10345 (LASAK_01577)	-	1539849..1540394 (-)	546	WP_056947792.1	Maf family protein	-
CCX78_RS08010 (LASAK_01578)	hexB	1540394..1542355 (-)	1962	WP_096585417.1	DNA mismatch repair endonuclease MutL	Machinery gene

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 37265.71 Da
• Isoelectric Point: 4.8413

>NTDB_id=57779 CCX78_RS07995 WP_011374076.1 1537230..1538237(-) (ruvB) [Latilactobacillus sakei strain LK-145]
MADERIVSAENDDFAEASIEKTLRPQVLAQYIGQDRVKNELAVYIEAAKKREESLDHVLLYGPPGLGKTTLAMVIANELQ
VQIRTTSGPAIERPGDLVALLNELQPGDVLFIDEIHRLPKMVEELLYSAMEDFYIDIVVGQGPTAHPVHFPLPPFTLIGA
TTRAGLLSAPLRDRFGIVEHMAYYTEADLMDIVQRSAGVFNMSIVPDGALEIARRSRGTPRIANRLLKRTRDYAQVADQN
TIDQAIADHALSQLQVDIRGLDGVDRKILQMMIDYYQGGPVGLKTIAANIGEENETIEEVYEPYLLQIGFLKRTQRGRMV
TPAGYAHLGMPYPEK

Nucleotide

• Length: 1008 bp

>NTDB_id=57779 CCX78_RS07995 WP_011374076.1 1537230..1538237(-) (ruvB) [Latilactobacillus sakei strain LK-145]
ATGGCAGATGAGCGAATTGTTTCAGCCGAAAACGATGATTTTGCTGAAGCAAGCATTGAAAAAACATTGCGGCCACAAGT
CCTTGCACAATATATCGGTCAAGATCGGGTTAAAAATGAATTAGCGGTCTATATTGAAGCGGCCAAAAAACGGGAAGAGT
CCCTCGATCACGTTTTACTTTATGGCCCACCAGGTTTGGGGAAAACCACGTTAGCGATGGTGATTGCTAACGAGTTGCAA
GTCCAGATTCGAACGACAAGTGGCCCCGCAATCGAGCGGCCTGGGGATTTAGTGGCGTTATTAAACGAGTTACAACCCGG
GGATGTTTTATTTATTGATGAAATTCATCGCTTACCTAAGATGGTTGAAGAATTACTTTATTCAGCGATGGAAGATTTCT
ACATCGATATTGTGGTTGGTCAAGGGCCCACCGCACATCCCGTCCATTTTCCATTACCACCATTCACATTGATTGGTGCG
ACGACGCGGGCGGGCTTATTGTCTGCGCCATTGCGAGATCGTTTCGGAATTGTGGAACACATGGCTTACTACACGGAAGC
TGATTTGATGGACATTGTGCAACGCTCAGCCGGCGTCTTTAACATGTCGATTGTGCCAGATGGCGCGTTAGAAATCGCAC
GTCGCTCGCGAGGGACGCCGCGGATTGCCAATCGGTTGTTGAAACGAACTCGAGATTACGCACAAGTGGCTGACCAAAAT
ACGATTGATCAGGCGATTGCTGATCACGCATTAAGTCAGCTGCAAGTTGATATTCGGGGCTTAGACGGTGTCGATCGCAA
AATCCTCCAGATGATGATTGATTATTATCAAGGCGGACCAGTCGGTTTAAAAACCATTGCCGCCAATATTGGTGAAGAAA
ACGAAACAATTGAAGAAGTTTACGAGCCTTATTTACTGCAAATTGGCTTTTTAAAACGAACGCAAAGAGGCCGGATGGTA
ACGCCGGCTGGTTATGCCCATTTAGGCATGCCTTATCCAGAAAAATAG

Domains

Predicted by InterProScan.

• RuvB AAA lid domain (AAA_lid_4) (184-257)

• RuvB C-terminal winged helix domain (WHD_RuvB) (260-328)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (23-181)

3D structure

• AlphaFold DB: Q38YQ9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Bacillus subtilis subsp. subtilis str. 168	64.653	98.806	0.639
ruvB	Streptococcus pneumoniae R6	64.688	95.522	0.618
ruvB	Streptococcus pneumoniae D39	64.688	95.522	0.618
ruvB	Streptococcus pneumoniae TIGR4	64.375	95.522	0.615
ruvB	Synechocystis sp. PCC 6803	58.28	93.731	0.546
ruvB	Helicobacter pylori 26695	51.829	97.91	0.507