Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   CCX78_RS08000 Genome accession   NZ_AP017931
Coordinates   1538250..1538861 (-) Length   203 a.a.
NCBI ID   WP_011374075.1    Uniprot ID   Q38YR0
Organism   Latilactobacillus sakei strain LK-145     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1533250..1543861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCX78_RS07980 (LASAK_01569) arcA 1534188..1535429 (-) 1242 WP_096585411.1 arginine deiminase -
  CCX78_RS07985 (LASAK_01571) - 1535636..1536157 (-) 522 WP_231952325.1 GNAT family N-acetyltransferase -
  CCX78_RS07990 (LASAK_01572) queA 1536184..1537215 (-) 1032 WP_011374077.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  CCX78_RS07995 (LASAK_01573) ruvB 1537230..1538237 (-) 1008 WP_011374076.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  CCX78_RS08000 (LASAK_01574) ruvA 1538250..1538861 (-) 612 WP_011374075.1 Holliday junction branch migration protein RuvA Machinery gene
  CCX78_RS10340 - 1539272..1539833 (-) 562 Protein_1533 TIGR00730 family Rossman fold protein -
  CCX78_RS10345 (LASAK_01577) - 1539849..1540394 (-) 546 WP_056947792.1 Maf family protein -
  CCX78_RS08010 (LASAK_01578) hexB 1540394..1542355 (-) 1962 WP_096585417.1 DNA mismatch repair endonuclease MutL Machinery gene

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22143.35 Da        Isoelectric Point: 4.8129

>NTDB_id=57780 CCX78_RS08000 WP_011374075.1 1538250..1538861(-) (ruvA) [Latilactobacillus sakei strain LK-145]
MYEYLKGLVTAVNPYYVVLEVQGIGYQLQVANPYRYTESMSEVVQIFVHQAVRDTDITLFGFYDLDEKQLFQKLISVSGI
GPKSALAILANSDHSGLIQAIMNDDIGYLTKFPGVGKKTAQQIALDLKGKLGDLEQSATLVGQTAIDLGSQGDSPELSDA
LAALSALGYSAREVKAITPKLTDFAAQTTDQYLREGLRLLMKK

Nucleotide


Download         Length: 612 bp        

>NTDB_id=57780 CCX78_RS08000 WP_011374075.1 1538250..1538861(-) (ruvA) [Latilactobacillus sakei strain LK-145]
ATGTATGAATATTTAAAGGGTTTAGTGACGGCGGTTAATCCGTATTACGTTGTTTTGGAAGTCCAAGGAATTGGCTATCA
ATTACAAGTTGCCAACCCATATCGGTATACGGAATCGATGAGCGAAGTGGTTCAAATTTTTGTCCACCAAGCGGTACGCG
ATACTGATATTACGCTTTTTGGCTTTTACGACTTAGATGAAAAACAACTTTTCCAAAAATTAATCAGTGTTTCCGGAATT
GGTCCCAAGAGTGCCTTGGCAATTTTGGCTAACAGTGATCATTCTGGCTTAATTCAGGCGATTATGAACGATGATATTGG
GTACTTAACGAAGTTCCCAGGCGTTGGGAAGAAGACGGCCCAACAGATTGCCTTAGATCTTAAAGGTAAGTTAGGTGATC
TAGAACAAAGCGCAACGTTAGTCGGCCAAACGGCAATTGATTTAGGCAGCCAAGGCGATTCACCTGAATTAAGTGATGCA
CTAGCGGCCTTGAGTGCGCTTGGTTATTCCGCACGGGAAGTCAAAGCGATTACGCCTAAGTTAACTGATTTTGCAGCGCA
AACAACTGATCAATATCTCAGAGAAGGTTTGCGGTTATTGATGAAGAAATAA

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(157-201)

Helix-hairpin-helix domain (HHH_5)

(71-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q38YR0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

48.293

100

0.488
  ruvA Streptococcus pneumoniae R6

48.293

100

0.488
  ruvA Streptococcus pneumoniae D39

48.293

100

0.488
  ruvA Bacillus subtilis subsp. subtilis str. 168

46.078

100

0.463

Multiple sequence alignment